Package: myvariant 1.43.0

Adam Mark, Chunlei Wu

myvariant: Accesses MyVariant.info variant query and annotation services

MyVariant.info is a comprehensive aggregation of variant annotation resources. myvariant is a wrapper for querying MyVariant.info services

Authors:Adam Mark

myvariant_1.43.0.tar.gz
myvariant_1.43.0.zip(r-4.7)myvariant_1.43.0.zip(r-4.6)myvariant_1.43.0.zip(r-4.5)
myvariant_1.43.0.tgz(r-4.6-any)myvariant_1.43.0.tgz(r-4.5-any)
myvariant_1.43.0.tar.gz(r-4.7-any)myvariant_1.43.0.tar.gz(r-4.6-any)
myvariant_1.43.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
myvariant/json (API)

# Install 'myvariant' in R:
install.packages('myvariant', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:myvariant-1.43.0(bioc 3.24)myvariant-1.42.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

variantannotationannotationgenomicvariation

5.08 score 27 scripts 409 downloads 3 mentions 8 exports 115 dependencies

Last updated from:17c248a4a0. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR208
linux-devel-x86_64NOTE390
source / vignettesOK289
linux-release-x86_64NOTE422
macos-release-arm64NOTE334
macos-oldrel-arm64NOTE258
windows-develNOTE329
windows-releaseNOTE287
windows-oldrelNOTE312
wasm-releaseOK172

Exports:formatHgvsformatSingleHgvsgetVariantgetVariantsmetadataMyVariantqueryVariantqueryVariants

Dependencies:abindAnnotationDbiaskpassbackportsbase64encBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomebslibcachemcheckmatecigarillocliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIDelayedArraydigestevaluatefarverfastmapfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetshttrIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimennetopensslpkgconfigplyrpngR6rappdirsRColorBrewerRcppRCurlrestfulrRhtslibrjsonrlangrmarkdownrpartRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraystringistringrSummarizedExperimentsystinytexUCSC.utilsVariantAnnotationvctrsviridisLitewithrxfunXMLXVectoryaml

Using MyVariant.R

Rendered frommyvariant.Rnwusingutils::Sweaveon Jun 09 2026.

Last update: 2015-08-13
Started: 2015-08-13

Readme and manuals

Help Manual

Help pageTopics
Get all HGVS IDs from Vcf object.formatHgvs
Get Hgvs HGVS ID from chromosome, position, reference and alternate alleles.formatSingleHgvs
Return the variant object for the given HGVS id.getVariant getVariant,missing-method getVariant,MyVariant-method
Return the list of variant objects for the given list of HGVS ids.getVariants getVariants,missing-method getVariants,MyVariant-method
metadatametadata metadata,MyVariant-method
Access MyVariant.info variant annotation servicesmyvariant
MyVariantMyVariant
Class '"MyVariant"'MyVariant-class
Return the query result.queryVariant queryVariant,missing-method queryVariant,MyVariant-method
Return the batch query result.queryVariants queryVariants,missing-method queryVariants,MyVariant-method