Package: multiWGCNA 1.3.1

Dario Tommasini

multiWGCNA: multiWGCNA

An R package for deeping mining gene co-expression networks in multi-trait expression data. Provides functions for analyzing, comparing, and visualizing WGCNA networks across conditions. multiWGCNA was designed to handle the common case where there are multiple biologically meaningful sample traits, such as disease vs wildtype across development or anatomical region.

Authors:Dario Tommasini [aut, cre], Brent Fogel [aut, ctb]

multiWGCNA_1.3.1.tar.gz
multiWGCNA_1.3.1.zip(r-4.5)multiWGCNA_1.3.1.zip(r-4.4)multiWGCNA_1.3.1.zip(r-4.3)
multiWGCNA_1.3.1.tgz(r-4.4-any)multiWGCNA_1.3.1.tgz(r-4.3-any)
multiWGCNA_1.3.1.tar.gz(r-4.5-noble)multiWGCNA_1.3.1.tar.gz(r-4.4-noble)
multiWGCNA_1.3.1.tgz(r-4.4-emscripten)multiWGCNA_1.3.1.tgz(r-4.3-emscripten)
multiWGCNA.pdf |multiWGCNA.html✨
multiWGCNA/json (API)
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Peer review:

On BioConductor:multiWGCNA-1.3.1(bioc 3.20)multiWGCNA-1.2.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

26 exports 1.24 score 138 dependencies

Last updated 2 months agofrom:6e4e30eec9

Exports:bidirectionalBestMatchescleanDatExprcoexpressionLineGraphcomputeOverlapsFromWGCNAconstructNetworksdiffCoexpressiondiffModuleExpressiondrawMultiWGCNAnetworkGetDatExprgetPreservationiteratemakeTraitTablemoduleComparisonPlotmoduleExpressionPlotmoduleToModuleHeatmapnameoverlapComparisonsperformANOVApreservationComparisonPlotpreservationComparisonsPreservationPermutationTestPreservationScoreDistributionrunDMEsummarizeResultsTOMFlowPlottopNGenes

Dependencies:abindAnnotationDbiaskpassbackportsbase64encBiobaseBiocGenericsBiostringsbitbit64blobbslibcachemcheckmatecirclizeclicliprclustercodetoolscolorspacecowplotcpp11crayoncurldata.tableDBIdcanrDelayedArraydigestdoParalleldoRNGdplyrdynamicTreeCutevaluatefansifarverfastclusterfastmapflashClustfontawesomeforeachforeignFormulafsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggalluvialggplot2ggrepelGlobalOptionsglueGO.dbgridExtragtablehighrHmischmshtmlTablehtmltoolshtmlwidgetshttrigraphimputeIRangesisobanditeratorsjquerylibjsonliteKEGGRESTknitrlabelinglatticelazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmennetopensslpatchworkpillarpkgconfigplogrplyrpngpreprocessCoreprettyunitsprogresspurrrR6rappdirsRColorBrewerRcppreadrreshape2rlangrmarkdownrngtoolsrpartRSQLiterstudioapiS4ArraysS4VectorssassscalesshapeSparseArraystringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttinytextzdbUCSC.utilsutf8vctrsviridisviridisLitevroomWGCNAwithrxfunXVectoryamlzlibbioc