Package: multiMiR 1.35.0

Spencer Mahaffey

multiMiR: Integration of multiple microRNA-target databases with their disease and drug associations

A collection of microRNAs/targets from external resources, including validated microRNA-target databases (miRecords, miRTarBase and TarBase), predicted microRNA-target databases (DIANA-microT, ElMMo, MicroCosm, miRanda, miRDB, PicTar, PITA and TargetScan) and microRNA-disease/drug databases (miR2Disease, Pharmaco-miR VerSe and PhenomiR).

Authors:Yuanbin Ru [aut], Matt Mulvahill [aut], Spencer Mahaffey [cre, aut], Katerina Kechris [aut, cph, ths]

multiMiR_1.35.0.tar.gz
multiMiR_1.35.0.zip(r-4.7)multiMiR_1.35.0.zip(r-4.6)multiMiR_1.35.0.zip(r-4.5)
multiMiR_1.35.0.tgz(r-4.6-any)multiMiR_1.35.0.tgz(r-4.5-any)
multiMiR_1.35.0.tar.gz(r-4.7-any)multiMiR_1.35.0.tar.gz(r-4.6-any)
multiMiR_1.35.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
multiMiR/json (API)

# Install 'multiMiR' in R:
install.packages('multiMiR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kechrislab/multimir/issues

On BioConductor:multiMiR-1.35.0(bioc 3.24)multiMiR-1.34.0(bioc 3.23)

mirnadatahomo_sapiens_datamus_musculus_datarattus_norvegicus_dataorganismdatamicrorna-sequencesql

8.27 score 24 stars 156 scripts 808 downloads 43 mentions 25 exports 46 dependencies

Last updated from:3c92c50fef. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING158
linux-devel-x86_64NOTE200
source / vignettesOK259
linux-release-x86_64NOTE233
macos-release-arm64NOTE136
macos-oldrel-arm64NOTE169
windows-develNOTE162
windows-releaseNOTE174
windows-oldrelNOTE154
wasm-releaseOK116

Exports:all_tablescolumnsconserved_tablesdiseasedrug_tablesget_multimirget.multimirkeyskeytypeslist_multimirlist.multimirmultimir_dbCountmultimir_dbInfomultimir_dbInfoVersionsmultimir_dbSchemamultimir_dbTablesmultimir_switchDBVersionpredicted_tablesreverse_table_lookupsearch_multimirsearch.multimirselectshowtable_typestables_wo_targetvalidated_tables

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64bitopsblobcachemclicpp11crayoncurlDBIdplyrfastmapgenericsgluehttrIRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigpngpurrrR6RCurlrlangRSQLiteS4VectorsSeqinfosystibbletidyselectutf8vctrswithrXMLXVector

The multiMiR user's guide

Yuanbin Ru, Matt Mulvahill, Spencer Mahaffey, Katerina Kechris

Rendered frommultiMiR.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2020-05-26
Started: 2017-01-03

Readme and manuals

Help Manual

Help pageTopics
Functions defining the category each table belongs to.all_tables all_tables, conserved_tables diseasedrug_tables diseasedrug_tables, predicted_tables predicted_tables, reverse_table_lookup tables_wo_target tables_wo_target, table_types validated_tables validated_tables,
Get microRNA-target Interactions from the multiMiR Packageget.multimir get_multimir
List microRNAs, Genes, Drugs Or Diseases in the multiMiR Packagelist.multimir list_multimir
S4 constructor and methods for object returned by 'get_multimir()'.as.mmquery_bioc columns,mmquery_bioc-method keys,mmquery_bioc-method keytypes,mmquery_bioc-method mmquery_bioc-class select,mmquery_bioc-method show,mmquery_bioc-method
MultiMiR: R package for accessing the multiMiR databasemultiMiR-package multiMiR multimir
Collect Information About the Web Server And Database of the multiMiR Packagemultimir_dbCount multimir_dbInfo multimir_dbInfoVersions multimir_dbSchema multimir_dbTables
Manage Database Version to usemultimir_switchDBVersion
Search the multiMiR Database Given a MySQL Querysearch.multimir search_multimir