Package: multiMiR 1.29.0

Spencer Mahaffey

multiMiR: Integration of multiple microRNA-target databases with their disease and drug associations

A collection of microRNAs/targets from external resources, including validated microRNA-target databases (miRecords, miRTarBase and TarBase), predicted microRNA-target databases (DIANA-microT, ElMMo, MicroCosm, miRanda, miRDB, PicTar, PITA and TargetScan) and microRNA-disease/drug databases (miR2Disease, Pharmaco-miR VerSe and PhenomiR).

Authors:Yuanbin Ru [aut], Matt Mulvahill [aut], Spencer Mahaffey [cre, aut], Katerina Kechris [aut, cph, ths]

multiMiR_1.29.0.tar.gz
multiMiR_1.29.0.zip(r-4.5)multiMiR_1.29.0.zip(r-4.4)multiMiR_1.29.0.zip(r-4.3)
multiMiR_1.29.0.tgz(r-4.4-any)multiMiR_1.29.0.tgz(r-4.3-any)
multiMiR_1.29.0.tar.gz(r-4.5-noble)multiMiR_1.29.0.tar.gz(r-4.4-noble)
multiMiR_1.29.0.tgz(r-4.4-emscripten)multiMiR_1.29.0.tgz(r-4.3-emscripten)
multiMiR.pdf |multiMiR.html✨
multiMiR/json (API)

# Install 'multiMiR' in R:

install.packages('multiMiR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kechrislab/multimir/issues

On BioConductor:multiMiR-1.29.0(bioc 3.21)multiMiR-1.28.0(bioc 3.20)

mirnadata homo_sapiens_data mus_musculus_data rattus_norvegicus_data organismdata microrna-sequence sql

8.44 score 20 stars 139 scripts 402 downloads 43 mentions 25 exports 51 dependencies

Last updated 2 months agofrom:2e6eb45788. Checks:OK: 3 NOTE: 4. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 29 2024
R-4.5-win	NOTE	Nov 29 2024
R-4.5-linux	NOTE	Nov 29 2024
R-4.4-win	NOTE	Nov 29 2024
R-4.4-mac	NOTE	Nov 29 2024
R-4.3-win	OK	Nov 29 2024
R-4.3-mac	OK	Nov 29 2024

Exports:all_tables columns conserved_tables diseasedrug_tables get_multimir get.multimir keys keytypes list_multimir list.multimir multimir_dbCount multimir_dbInfo multimir_dbInfoVersions multimir_dbSchema multimir_dbTables multimir_switchDBVersion predicted_tables reverse_table_lookup search_multimir search.multimir select show table_types tables_wo_target validated_tables

Dependencies:AnnotationDbi askpass Biobase BiocGenerics Biostrings bit bit64 bitops blob cachem cli cpp11 crayon curl DBI dplyr fansi fastmap generics GenomeInfoDb GenomeInfoDbData glue httr IRanges jsonlite KEGGREST lifecycle magrittr memoise mime openssl pillar pkgconfig plogr png purrr R6 RCurl rlang RSQLite S4Vectors sys tibble tidyselect UCSC.utils utf8 vctrs withr XML XVector zlibbioc

The multiMiR user's guide

Yuanbin Ru, Matt Mulvahill, Spencer Mahaffey, Katerina Kechris

Rendered frommultiMiR.Rmdusingknitr::rmarkdownon Nov 29 2024.

Last update: 2020-05-26
Started: 2017-01-03

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Functions defining the category each table belongs to.	all_tables all_tables, conserved_tables diseasedrug_tables diseasedrug_tables, predicted_tables predicted_tables, reverse_table_lookup tables_wo_target tables_wo_target, table_types validated_tables validated_tables,
Get microRNA-target Interactions from the multiMiR Package	get.multimir get_multimir
List microRNAs, Genes, Drugs Or Diseases in the multiMiR Package	list.multimir list_multimir
S4 constructor and methods for object returned by 'get_multimir()'.	as.mmquery_bioc columns,mmquery_bioc-method keys,mmquery_bioc-method keytypes,mmquery_bioc-method mmquery_bioc-class select,mmquery_bioc-method show,mmquery_bioc-method
MultiMiR: R package for accessing the multiMiR database	multiMiR-package multiMiR multimir
Collect Information About the Web Server And Database of the multiMiR Package	multimir_dbCount multimir_dbInfo multimir_dbInfoVersions multimir_dbSchema multimir_dbTables
Manage Database Version to use	multimir_switchDBVersion
Search the multiMiR Database Given a MySQL Query	search.multimir search_multimir