Package: multiGSEA 1.17.2
multiGSEA: Combining GSEA-based pathway enrichment with multi omics data integration
Extracted features from pathways derived from 8 different databases (KEGG, Reactome, Biocarta, etc.) can be used on transcriptomic, proteomic, and/or metabolomic level to calculate a combined GSEA-based enrichment score.
Authors:
multiGSEA_1.17.2.tar.gz
multiGSEA_1.17.2.zip(r-4.5)multiGSEA_1.17.2.zip(r-4.4)multiGSEA_1.17.2.zip(r-4.3)
multiGSEA_1.17.2.tgz(r-4.4-any)multiGSEA_1.17.2.tgz(r-4.3-any)
multiGSEA_1.17.2.tar.gz(r-4.5-noble)multiGSEA_1.17.2.tar.gz(r-4.4-noble)
multiGSEA_1.17.2.tgz(r-4.4-emscripten)multiGSEA_1.17.2.tgz(r-4.3-emscripten)
multiGSEA.pdf |multiGSEA.html✨
multiGSEA/json (API)
NEWS
# Install 'multiGSEA' in R: |
install.packages('multiGSEA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/yigbt/multigsea/issues
- metabolome - Metabolomic data set that is used in the toy example provided by the 'multiGSEA' package.
- proteome - Proteomic data set that is used in the toy example provided by the 'multiGSEA' package.
- transcriptome - Transcriptomic data set that is used in the toy example provided by the 'multiGSEA' package.
On BioConductor:multiGSEA-1.17.0(bioc 3.21)multiGSEA-1.16.0(bioc 3.20)
genesetenrichmentpathwaysreactomebiocarta
Last updated 27 days agofrom:6def494cfe. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 26 2024 |
R-4.5-win | OK | Nov 26 2024 |
R-4.5-linux | OK | Nov 26 2024 |
R-4.4-win | OK | Nov 26 2024 |
R-4.4-mac | OK | Nov 26 2024 |
R-4.3-win | OK | Nov 26 2024 |
R-4.3-mac | OK | Nov 26 2024 |
Exports:combinePvaluesextractPvaluesgetFeaturesgetGeneMappinggetMetaboliteMappinggetMultiOmicsFeaturesgetOrganismsinitOmicsDataStructuremultiGSEArankFeaturesrename_duplicates
Dependencies:AnnotationDbiAnnotationHubaskpassBHBiobaseBiocFileCacheBiocGenericsBiocManagerBiocParallelBiocVersionBiostringsbitbit64blobcachemclicodetoolscolorspacecowplotcpp11crayoncurldata.tableDBIdbplyrDEoptimRdplyrfansifarverfastmapfastmatchfgseafilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataggplot2gluegraphgraphitegtablehttrIRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelifecyclemagrittrMASSmathjaxrMatrixMatrixModelsmemoisemetaboliteIDmappingmetapmgcvmimemnormtmultcompmulttestmunsellmutossmvtnormnlmenumDerivopensslpillarpkgconfigplogrplotrixpngpurrrqqconfquantregR6rappdirsrbibutilsRColorBrewerRcppRdpackrlangrobustbaseRSQLiteS4VectorssandwichscalessnsnowSparseMstringistringrsurvivalsysTFisherTH.datatibbletidyrtidyselectUCSC.utilsutf8vctrsviridisLitewithrXVectoryamlzlibbioczoo