Package: msImpute 1.15.0
msImpute: Imputation of label-free mass spectrometry peptides
MsImpute is a package for imputation of peptide intensity in proteomics experiments. It additionally contains tools for MAR/MNAR diagnosis and assessment of distortions to the probability distribution of the data post imputation. The missing values are imputed by low-rank approximation of the underlying data matrix if they are MAR (method = "v2"), by Barycenter approach if missingness is MNAR ("v2-mnar"), or by Peptide Identity Propagation (PIP).
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msImpute_1.15.0.tar.gz
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msImpute.pdf |msImpute.html✨
msImpute/json (API)
NEWS
# Install 'msImpute' in R: |
install.packages('msImpute', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/davislaboratory/msimpute/issues
On BioConductor:msImpute-1.15.0(bioc 3.20)msImpute-1.14.0(bioc 3.19)
Last updated 2 months agofrom:6de7ce58af
Exports:computeStructuralMetricsCPDevidenceToMatrixfindVariableFeaturesKNCKNNmsImputemspipplotCV2scaleDataselectFeatures
Dependencies:abindaskpassbeachmatBHBiobaseBiocGenericsBiocNeighborsBiocParallelBiocSingularblustercliclustercodetoolscpp11crayoncurldata.tableDelayedArrayDelayedMatrixStatsdplyrdqrngedgeRfansiFNNformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesglueherehttrigraphIRangesirlbajsonlitelambda.rlatticelifecyclelimmalocfitmagrittrMatrixMatrixGenericsmatrixStatsmetapodmimemvtnormopensslpdistpillarpkgconfigpngpurrrR6rappdirsRcppRcppHNSWRcppTOMLreticulaterlangrprojrootrsvdS4ArraysS4VectorsScaledMatrixscranscuttleSingleCellExperimentsitmosnowsoftImputeSparseArraysparseMatrixStatsstatmodstringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXVectorzlibbioc