Package: mpra 1.29.0

Leslie Myint

mpra: Analyze massively parallel reporter assays

Tools for data management, count preprocessing, and differential analysis in massively parallel report assays (MPRA).

Authors:Leslie Myint [cre, aut], Kasper D. Hansen [aut]

mpra_1.29.0.tar.gz
mpra_1.29.0.zip(r-4.5)mpra_1.29.0.zip(r-4.4)mpra_1.29.0.zip(r-4.3)
mpra_1.29.0.tgz(r-4.5-any)mpra_1.29.0.tgz(r-4.4-any)mpra_1.29.0.tgz(r-4.3-any)
mpra_1.29.0.tar.gz(r-4.5-noble)mpra_1.29.0.tar.gz(r-4.4-noble)
mpra_1.29.0.tgz(r-4.4-emscripten)mpra_1.29.0.tgz(r-4.3-emscripten)
mpra.pdf |mpra.html✨
mpra/json (API)
NEWS

# Install 'mpra' in R:
install.packages('mpra', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hansenlab/mpra/issues

Datasets:

On BioConductor:mpra-1.29.0(bioc 3.21)mpra-1.28.0(bioc 3.20)

softwaregeneregulationsequencingfunctionalgenomics

6.20 score 5 stars 15 scripts 256 downloads 2 mentions 11 exports 41 dependencies

Last updated 4 months agofrom:033bb6a5f4. Checks:5 OK, 2 NOTE, 1 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 28 2025
R-4.5-winNOTEJan 28 2025
R-4.5-macWARNINGJan 28 2025
R-4.5-linuxNOTEJan 28 2025
R-4.4-winOKJan 28 2025
R-4.4-macOKJan 28 2025
R-4.3-winOKJan 28 2025
R-4.3-macOKJan 28 2025

Exports:compute_logratioget_precision_weightsgetBarcodegetDNAgetEidgetEseqgetRNAmpralmMPRASetnormalize_countsshow

Dependencies:abindaskpassBiobaseBiocGenericsclicolorspacecrayoncurlDelayedArrayfarvergenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesjsonlitelabelinglatticelifecyclelimmaMatrixMatrixGenericsmatrixStatsmimemunsellopensslR6RColorBrewerrlangS4ArraysS4VectorsscalesSparseArraystatmodSummarizedExperimentsysUCSC.utilsviridisLiteXVector

The mpra User's Guide

Leslie Myint, Kasper Daniel Hansen

Rendered frommpra.Rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2024-09-13
Started: 2017-08-26