Package: mpra 1.29.0

Leslie Myint

mpra: Analyze massively parallel reporter assays

Tools for data management, count preprocessing, and differential analysis in massively parallel report assays (MPRA).

Authors:Leslie Myint [cre, aut], Kasper D. Hansen [aut]

mpra_1.29.0.tar.gz
mpra_1.29.0.zip(r-4.5)mpra_1.29.0.zip(r-4.4)mpra_1.29.0.zip(r-4.3)
mpra_1.29.0.tgz(r-4.4-any)mpra_1.29.0.tgz(r-4.3-any)
mpra_1.29.0.tar.gz(r-4.5-noble)mpra_1.29.0.tar.gz(r-4.4-noble)
mpra_1.29.0.tgz(r-4.4-emscripten)mpra_1.29.0.tgz(r-4.3-emscripten)
mpra.pdf |mpra.html✨
mpra/json (API)
NEWS

# Install 'mpra' in R:
install.packages('mpra', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/hansenlab/mpra/issues

Datasets:

On BioConductor:mpra-1.27.3(bioc 3.20)mpra-1.26.2(bioc 3.19)

softwaregeneregulationsequencingfunctionalgenomics

6.14 score 5 stars 13 scripts 212 downloads 2 mentions 11 exports 41 dependencies

Last updated 23 days agofrom:033bb6a5f4. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winNOTEOct 31 2024
R-4.5-linuxNOTEOct 30 2024
R-4.4-winOKOct 31 2024
R-4.4-macOKOct 31 2024
R-4.3-winOKOct 31 2024
R-4.3-macOKOct 31 2024

Exports:compute_logratioget_precision_weightsgetBarcodegetDNAgetEidgetEseqgetRNAmpralmMPRASetnormalize_countsshow

Dependencies:abindaskpassBiobaseBiocGenericsclicolorspacecrayoncurlDelayedArrayfarverGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesjsonlitelabelinglatticelifecyclelimmaMatrixMatrixGenericsmatrixStatsmimemunsellopensslR6RColorBrewerrlangS4ArraysS4VectorsscalesSparseArraystatmodSummarizedExperimentsysUCSC.utilsviridisLiteXVectorzlibbioc

The mpra User's Guide

Leslie Myint, Kasper Daniel Hansen

Rendered frommpra.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2024-09-13
Started: 2017-08-26