Package: mpra 1.35.0

Leslie Myint

mpra: Analyze massively parallel reporter assays

Tools for data management, count preprocessing, and differential analysis in massively parallel report assays (MPRA).

Authors:Leslie Myint [cre, aut], Kasper D. Hansen [aut]

mpra_1.35.0.tar.gz
mpra_1.35.0.zip(r-4.7)mpra_1.35.0.zip(r-4.6)mpra_1.35.0.zip(r-4.5)
mpra_1.35.0.tgz(r-4.6-any)mpra_1.35.0.tgz(r-4.5-any)
mpra_1.35.0.tar.gz(r-4.7-any)mpra_1.35.0.tar.gz(r-4.6-any)
mpra_1.35.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
mpra/json (API)
NEWS

# Install 'mpra' in R:
install.packages('mpra', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hansenlab/mpra/issues

Datasets:

On BioConductor:mpra-1.35.0(bioc 3.24)mpra-1.34.0(bioc 3.23)

softwaregeneregulationsequencingfunctionalgenomics

6.46 score 6 stars 34 scripts 450 downloads 2 mentions 11 exports 29 dependencies

Last updated from:8dee10e44d. Checks:8 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE163
linux-devel-x86_64NOTE307
source / vignettesOK237
linux-release-x86_64NOTE306
macos-release-arm64NOTE225
macos-oldrel-arm64NOTE168
windows-develNOTE256
windows-releaseNOTE173
windows-oldrelNOTE196
wasm-releaseOK113

Exports:compute_logratioget_precision_weightsgetBarcodegetDNAgetEidgetEseqgetRNAmpralmMPRASetnormalize_countsshow

Dependencies:abindBiobaseBiocGenericscliDelayedArrayfarvergenericsGenomicRangesglueIRangeslabelinglatticelifecyclelimmaMatrixMatrixGenericsmatrixStatsR6RColorBrewerrlangS4ArraysS4VectorsscalesSeqinfoSparseArraystatmodSummarizedExperimentviridisLiteXVector

The mpra User's Guide

Leslie Myint, Kasper Daniel Hansen

Rendered frommpra.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2024-09-13
Started: 2017-08-26