Package: microRNA 1.65.1

"Michael Lawrence"

microRNA: Data and functions for dealing with microRNAs

Different data resources for microRNAs and some functions for manipulating them.

Authors:R. Gentleman, S. Falcon

microRNA_1.65.1.tar.gz
microRNA_1.65.1.zip(r-4.5)microRNA_1.65.1.zip(r-4.4)microRNA_1.65.1.zip(r-4.3)
microRNA_1.65.1.tgz(r-4.5-x86_64)microRNA_1.65.1.tgz(r-4.5-arm64)microRNA_1.65.1.tgz(r-4.4-x86_64)microRNA_1.65.1.tgz(r-4.4-arm64)microRNA_1.65.1.tgz(r-4.3-x86_64)microRNA_1.65.1.tgz(r-4.3-arm64)
microRNA_1.65.1.tar.gz(r-4.5-noble)microRNA_1.65.1.tar.gz(r-4.4-noble)
microRNA_1.65.1.tgz(r-4.4-emscripten)microRNA_1.65.1.tgz(r-4.3-emscripten)
microRNA.pdf |microRNA.html✨
microRNA/json (API)

# Install 'microRNA' in R:

install.packages('microRNA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

hsSeqs - Human Mature microRNA Sequences
hsTargets - Human microRNAs and their target IDs
mmSeqs - Mouse Mature microRNA Sequences
mmTargets - Mouse microRNAs and their target IDs
s3utr - Test sequence data

On BioConductor:microRNA-1.65.0(bioc 3.21)microRNA-1.64.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

infrastructure genomeannotation sequencematching cpp

3.48 score 7 scripts 442 downloads 63 mentions 6 exports 18 dependencies

Last updated 18 days agofrom:a40bf50171. Checks:11 OK. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Feb 05 2025
R-4.5-win-x86_64	OK	Feb 05 2025
R-4.5-mac-x86_64	OK	Feb 05 2025
R-4.5-mac-aarch64	OK	Feb 05 2025
R-4.5-linux-x86_64	OK	Feb 05 2025
R-4.4-win-x86_64	OK	Feb 05 2025
R-4.4-mac-x86_64	OK	Feb 05 2025
R-4.4-mac-aarch64	OK	Feb 05 2025
R-4.3-win-x86_64	OK	Feb 05 2025
R-4.3-mac-x86_64	OK	Feb 05 2025
R-4.3-mac-aarch64	OK	Feb 05 2025

Exports:get_selfhyb_subseq matchSeeds RNA2DNA seedRegions show_selfhyb_counts show_selfhyb_lengths

Dependencies:askpass BiocGenerics Biostrings crayon curl generics GenomeInfoDb GenomeInfoDbData httr IRanges jsonlite mime openssl R6 S4Vectors sys UCSC.utils XVector

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Get Self-Hybridizing Subsequences	get_selfhyb_subseq show_selfhyb_counts show_selfhyb_lengths
Human Mature microRNA Sequences	hsSeqs
Human microRNAs and their target IDs	hsTargets
A function to match seed regions to sequences.	matchSeeds
Mouse Mature microRNA Sequences	mmSeqs
Mouse microRNAs and their target IDs	mmTargets
A Function to translate RNA sequences into DNA sequences.	RNA2DNA
Test sequence data	s3utr
A function to retrieve the seed regions from microRNA sequences	seedRegions

Usage by other packages (reverse dependencies)