Package: miRcomp 1.37.0

Matthew N. McCall

miRcomp: Tools to assess and compare miRNA expression estimatation methods

Based on a large miRNA dilution study, this package provides tools to read in the raw amplification data and use these data to assess the performance of methods that estimate expression from the amplification curves.

Authors:Matthew N. McCall <[email protected]>, Lauren Kemperman <[email protected]>

miRcomp_1.37.0.tar.gz
miRcomp_1.37.0.zip(r-4.5)miRcomp_1.37.0.zip(r-4.4)miRcomp_1.37.0.zip(r-4.3)
miRcomp_1.37.0.tgz(r-4.4-any)miRcomp_1.37.0.tgz(r-4.3-any)
miRcomp_1.37.0.tar.gz(r-4.5-noble)miRcomp_1.37.0.tar.gz(r-4.4-noble)
miRcomp_1.37.0.tgz(r-4.4-emscripten)miRcomp_1.37.0.tgz(r-4.3-emscripten)
miRcomp.pdf |miRcomp.html✨
miRcomp/json (API)
NEWS

# Install 'miRcomp' in R:
install.packages('miRcomp', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • lifetech - The processed data generated using the LifeTech software.
  • qpcRb4 - The processed data generated using the 4 parameter sigmoidal method from the qpcR software.
  • qpcRb5 - The processed data generated using the 5 parameter sigmodial method from the qpcR software.
  • qpcRdefault - The processed data generated using the default method (4 parameter log-logistic) implemented in the qpcR software package.
  • qpcRl5 - The processed data generated using the 5 parameter log-logistic method from the qpcR software.
  • qpcRlinexp - The processed data generated using the linear-exponential method implemented in the qpcR software package.

On BioConductor:miRcomp-1.37.0(bioc 3.21)miRcomp-1.36.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwareqpcrpreprocessingqualitycontrol

3.30 score 1 scripts 242 downloads 1 mentions 8 exports 5 dependencies

Last updated 2 months agofrom:f81710ec1b. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 19 2024
R-4.5-winWARNINGDec 19 2024
R-4.5-linuxWARNINGDec 19 2024
R-4.4-winWARNINGDec 19 2024
R-4.4-macWARNINGDec 19 2024
R-4.3-winWARNINGDec 19 2024
R-4.3-macWARNINGDec 19 2024

Exports:accuracycompleteFeaturesexpressionComplimitOfDetectionmiRcompShinyAppprecisionqualityAssessmenttitrationResponse

Dependencies:BiobaseBiocGenericsgenericsKernSmoothmiRcompData

Assessment and comparison of miRNA expression estimation methods (miRcomp)

Matthew N. McCall

Rendered frommiRcomp.Rmdusingknitr::rmarkdownon Dec 19 2024.

Last update: 2015-10-09
Started: 2015-10-09