Package: miRNAmeConverter 1.35.0
Stefan J. Haunsberger
miRNAmeConverter: Convert miRNA Names to Different miRBase Versions
Translating mature miRNA names to different miRBase versions, sequence retrieval, checking names for validity and detecting miRBase version of a given set of names (data from http://www.mirbase.org/).
Authors:
miRNAmeConverter_1.35.0.tar.gz
miRNAmeConverter_1.35.0.zip(r-4.5)miRNAmeConverter_1.35.0.zip(r-4.4)miRNAmeConverter_1.35.0.zip(r-4.3)
miRNAmeConverter_1.35.0.tgz(r-4.4-any)miRNAmeConverter_1.35.0.tgz(r-4.3-any)
miRNAmeConverter_1.35.0.tar.gz(r-4.5-noble)miRNAmeConverter_1.35.0.tar.gz(r-4.4-noble)
miRNAmeConverter_1.35.0.tgz(r-4.4-emscripten)miRNAmeConverter_1.35.0.tgz(r-4.3-emscripten)
miRNAmeConverter.pdf |miRNAmeConverter.html✨
miRNAmeConverter/json (API)
NEWS
| # Install 'miRNAmeConverter' in R: |
| install.packages('miRNAmeConverter', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- example.miRNAs - MiRNA names.
On BioConductor:miRNAmeConverter-1.33.0(bioc 3.20)miRNAmeConverter-1.32.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 25 days agofrom:9ede4bb3ef. Checks:OK: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 30 2024 |
| R-4.5-win | WARNING | Oct 31 2024 |
| R-4.5-linux | WARNING | Oct 30 2024 |
| R-4.4-win | WARNING | Oct 31 2024 |
| R-4.4-mac | WARNING | Oct 31 2024 |
| R-4.3-win | WARNING | Oct 31 2024 |
| R-4.3-mac | WARNING | Oct 31 2024 |
Exports:assessVersioncheckMiRNANamecurrentVersiongetMirnasForMirbaseVersionMiRNANameConverternOrganismsnTotalEntriessaveResultsshowtranslateMiRNANamevalidOrganismsvalidVersions
Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapGenomeInfoDbGenomeInfoDbDatagluegtoolshttrIRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimemiRBaseVersions.dbopensslpkgconfigplogrplyrpngR6Rcppreshape2rlangRSQLiteS4VectorsstringistringrsysUCSC.utilsvctrsXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Check if given miRNA names can be assigned to unique MIMAT accessions among all versions | assessMiRNASwappingMIMAT |
| Assess miRBase version | assessVersion assessVersion,MiRNANameConverter-method |
| Check miRNA names for validity | checkMiRNAName checkMiRNAName,MiRNANameConverter-method |
| Get current version | currentVersion currentVersion,MiRNANameConverter-method |
| Set current version | currentVersion<- |
| miRNA names. | example.miRNAs |
| MiRNANameConverter constructor | miRNAmeConverter-package miRNAmeConverter |
| Instantiate from MiRNANameConverter class | MiRNANameConverter |
| MiRNANameConverter constructor | MiRNANameConverter,ANY-method |
| Get number of organisms | nOrganisms nOrganisms,MiRNANameConverter-method |
| Set number of organisms | nOrganisms<- |
| Get total number database entries | nTotalEntries nTotalEntries,MiRNANameConverter-method |
| Set total number database entries | nTotalEntries<- |
| Save miRNA translation results | saveResults saveResults,MiRNANameConverter,data.frame-method |
| Show-method | show,MiRNANameConverter-method |
| Translate miRNA name | translateMiRNAName translateMiRNAName,MiRNANameConverter,character-method |
| Get valid organisms | validOrganisms validOrganisms,MiRNANameConverter-method |
| Set valid organisms | validOrganisms<- |
| Get valid versions | validVersions validVersions,MiRNANameConverter-method |
| Set valid versions | validVersions<- |
