Package: methylCC 1.27.0

Stephanie C. Hicks

methylCC: Estimate the cell composition of whole blood in DNA methylation samples

A tool to estimate the cell composition of DNA methylation whole blood sample measured on any platform technology (microarray and sequencing).

Authors:Stephanie C. Hicks [aut, cre], Rafael Irizarry [aut]

methylCC_1.27.0.tar.gz
methylCC_1.27.0.zip(r-4.7)methylCC_1.27.0.zip(r-4.6)methylCC_1.27.0.zip(r-4.5)
methylCC_1.27.0.tgz(r-4.6-any)methylCC_1.27.0.tgz(r-4.5-any)
methylCC_1.27.0.tar.gz(r-4.7-any)methylCC_1.27.0.tar.gz(r-4.6-any)
methylCC_1.27.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
methylCC/json (API)
NEWS

# Install 'methylCC' in R:
install.packages('methylCC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/stephaniehicks/methylcc/issues

Datasets:

On BioConductor:methylCC-1.27.0(bioc 3.24)methylCC-1.26.0(bioc 3.23)

microarraysequencingdnamethylationmethylationarraymethylseqwholegenome

6.70 score 18 stars 23 scripts 436 downloads 2 mentions 2 exports 149 dependencies

Last updated from:5f22bd3b6b. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE377
linux-devel-x86_64OK616
source / vignettesOK590
linux-release-x86_64OK734
macos-release-arm64OK522
macos-oldrel-arm64OK365
windows-develOK549
windows-releaseOK626
windows-oldrelOK564
wasm-releaseOK332

Exports:cell_countsestimatecc

Dependencies:abindannotateAnnotationDbiaskpassassortheadbase64beachmatbeanplotBHBiobaseBiocBaseUtilsBiocGenericsBiocIObiocmakeBiocParallelBiostringsbitbit64bitopsblobBSgenomebsseqbumphuntercachemcigarilloclicliprcodetoolscpp11crayoncurldata.tableDBIDelayedArrayDelayedMatrixStatsdigestdir.expirydoRNGdplyrfarverfastmapfilelockFlowSorted.Blood.450kforeachformatRfutile.loggerfutile.optionsgenefiltergenericsGenomicAlignmentsGenomicFeaturesGenomicRangesGEOquerygluegtoolsh5mreadHDF5Arrayhmshttrhttr2IlluminaHumanMethylation450kanno.ilmn12.hg19IlluminaHumanMethylation450kmanifestilluminaioIRangesiteratorsjsonliteKEGGRESTlabelinglambda.rlatticelifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemimeminfimulttestnlmenor1mixopensslpermutepillarpkgconfigplyrpngpreprocessCoreprettyunitsprogresspurrrquadprogR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRCurlreadrrentrezreshaperestfulrrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrngtoolsRsamtoolsRSQLitertracklayerrvestS4ArraysS4VectorsscalesscrimeselectrSeqinfosiggenessnowSparseArraysparseMatrixStatsstatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithrXMLxml2xtableXVectoryaml

The methylCC user's guide

Stephanie C. Hicks, Rafael A. Irizarry

Rendered frommethylCC.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2020-03-17
Started: 2019-10-05