Package: methylCC 1.21.0

Stephanie C. Hicks

methylCC: Estimate the cell composition of whole blood in DNA methylation samples

A tool to estimate the cell composition of DNA methylation whole blood sample measured on any platform technology (microarray and sequencing).

Authors:Stephanie C. Hicks [aut, cre], Rafael Irizarry [aut]

methylCC_1.21.0.tar.gz
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methylCC.pdf |methylCC.html✨
methylCC/json (API)
NEWS

# Install 'methylCC' in R:
install.packages('methylCC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/stephaniehicks/methylcc/issues

Datasets:

On BioConductor:methylCC-1.21.0(bioc 3.21)methylCC-1.20.0(bioc 3.20)

microarraysequencingdnamethylationmethylationarraymethylseqwholegenome

5.18 score 19 stars 8 scripts 196 downloads 2 mentions 2 exports 151 dependencies

Last updated 23 days agofrom:109b2f62d1. Checks:ERROR: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesFAILOct 31 2024
R-4.5-winWARNINGOct 31 2024
R-4.5-linuxWARNINGOct 31 2024
R-4.4-winWARNINGOct 31 2024
R-4.4-macWARNINGOct 31 2024
R-4.3-winWARNINGOct 31 2024
R-4.3-macWARNINGOct 31 2024

Exports:cell_countsestimatecc

Dependencies:abindannotateAnnotationDbiaskpassassortheadbase64beachmatbeanplotBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomebsseqbumphuntercachemclicliprcodetoolscolorspacecpp11crayoncurldata.tableDBIDelayedArrayDelayedMatrixStatsdigestdoRNGdplyrfansifarverfastmapFlowSorted.Blood.450kforeachformatRfutile.loggerfutile.optionsgenefiltergenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesGEOquerygluegtoolsHDF5Arrayhmshttrhttr2IlluminaHumanMethylation450kanno.ilmn12.hg19IlluminaHumanMethylation450kmanifestilluminaioIRangesiteratorsjsonliteKEGGRESTlabelinglambda.rlatticelifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemimeminfimulttestmunsellnlmenor1mixopensslpermutepillarpkgconfigplogrplyrplyrangespngpreprocessCoreprettyunitsprogresspurrrquadprogR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRCurlreadrrentrezreshaperestfulrrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrngtoolsRsamtoolsRSQLitertracklayerrvestS4ArraysS4VectorsscalesscrimeselectrsiggenessnowSparseArraysparseMatrixStatsstatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbUCSC.utilsutf8vctrsviridisLitevroomwithrXMLxml2xtableXVectoryamlzlibbioc