Package: methimpute 1.27.0
methimpute: Imputation-guided re-construction of complete methylomes from WGBS data
This package implements functions for calling methylation for all cytosines in the genome.
Authors:
methimpute_1.27.0.tar.gz
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methimpute.pdf |methimpute.html✨
methimpute/json (API)
NEWS
# Install 'methimpute' in R: |
install.packages('methimpute', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- arabidopsis_TEs - Transposable element coordinates for Arabidopsis
- arabidopsis_chromosomes - Chromosome lengths for Arabidopsis
- arabidopsis_genes - Gene coordinates for Arabidopsis
- arabidopsis_toydata - Toy data for Arabidopsis
On BioConductor:methimpute-1.27.0(bioc 3.20)methimpute-1.26.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:2e2fc1f64b
Exports:binCountsbinMethylomebinomialTestMethylationbinPositionscallMethylationcallMethylationSeparatecollapseBinsdistanceCorrelationestimateTransDistexportMethylomeextractCytosinesFromFASTAgetDistinctColorsgetStateColorsimportBismarkimportBSMAPimportBSSeekerimportMethylpyinflateMethylomeloadFromFilesplotConvergenceplotEnrichmentplotHistogramplotPosteriorDistanceplotScatterplotTransitionProbs
Dependencies:askpassBiocGenericsBiostringsclicolorspacecrayoncurldata.tablefansifarverGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehttrIRangesisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmimeminpack.lmmunsellnlmeopensslpillarpkgconfigplyrR6RColorBrewerRcppreshape2rlangS4VectorsscalesstringistringrsystibbleUCSC.utilsutf8vctrsviridisLitewithrXVectorzlibbioc