Package: methInheritSim 1.35.0

Pascal Belleau

methInheritSim: Simulating Whole-Genome Inherited Bisulphite Sequencing Data

Simulate a multigeneration methylation case versus control experiment with inheritance relation using a real control dataset.

Authors:Pascal Belleau, Astrid Deschênes and Arnaud Droit

methInheritSim_1.35.0.tar.gz
methInheritSim_1.35.0.zip(r-4.7-any)methInheritSim_1.35.0.zip(r-4.6-any)methInheritSim_1.35.0.zip(r-4.5-any)
methInheritSim_1.35.0.tgz(r-4.6-any)methInheritSim_1.35.0.tgz(r-4.5-any)
methInheritSim_1.35.0.tar.gz(r-4.7-any)methInheritSim_1.35.0.tar.gz(r-4.6-any)
methInheritSim_1.35.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
methInheritSim/json (API)

# Install 'methInheritSim' in R:
install.packages('methInheritSim', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/belleau/methinheritsim/issues

Datasets:
  • dataSimExample - A 'list' containing methylation information used by some internal functions (for demo purpose.
  • samplesForChrSynthetic - All samples information, formated by 'methylKit', in a 'methylBase' format (for demo purpose).

On BioConductor:methInheritSim-1.35.0(bioc 3.24)methInheritSim-1.34.0(bioc 3.23)

biologicalquestionepigeneticsdnamethylationdifferentialmethylationmethylseqsoftwareimmunooncologystatisticalmethodwholegenomesequencingbisulphite-sequencinginheritancemethylationsimulation

3.90 score 2 stars 6 scripts 527 downloads 1 exports 91 dependencies

Last updated from:17b462cd6d. Checks:9 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR200
linux-develERROR379
source / vignettesERROR389
linux-releaseERROR344
macos-releaseERROR228
macos-oldrelERROR220
windows-develERROR229
windows-releaseERROR229
windows-oldrelERROR237
wasm-releaseOK160

Exports:runSim

Dependencies:askpassbbmlebdsmatrixBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitopscigarilloclicodacodetoolscpp11crayoncurldata.tableemdbookexpmfarverfastsegformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicRangesggplot2gluegtablegtoolshttrIRangesisobandjsonliteKernSmoothlabelinglambda.rlatticelifecyclelimmamagrittrMASSMatrixmclustmethylKitmgcvmimemsmmvtnormnlmenumDerivopensslpillarpkgconfigplyrqvalueR.methodsS3R.ooR.utilsR6RColorBrewerRcppRCurlreshape2restfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4VectorsS7scalesSeqinfosnowstatmodstringistringrsurvivalsystibbleutf8vctrsviridisLitewithrXMLXVectoryaml