Package: methInheritSim 1.27.0
Pascal Belleau
methInheritSim: Simulating Whole-Genome Inherited Bisulphite Sequencing Data
Simulate a multigeneration methylation case versus control experiment with inheritance relation using a real control dataset.
Authors:
methInheritSim_1.27.0.tar.gz
methInheritSim_1.27.0.zip(r-4.5)methInheritSim_1.27.0.zip(r-4.4)methInheritSim_1.27.0.zip(r-4.3)
methInheritSim_1.27.0.tgz(r-4.4-any)methInheritSim_1.27.0.tgz(r-4.3-any)
methInheritSim_1.27.0.tar.gz(r-4.5-noble)methInheritSim_1.27.0.tar.gz(r-4.4-noble)
methInheritSim_1.27.0.tgz(r-4.4-emscripten)methInheritSim_1.27.0.tgz(r-4.3-emscripten)
methInheritSim.pdf |methInheritSim.html✨
methInheritSim/json (API)
NEWS
| # Install 'methInheritSim' in R: |
| install.packages('methInheritSim', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/belleau/methinheritsim/issues
- dataSimExample - A 'list' containing methylation information used by some internal functions (for demo purpose.
- samplesForChrSynthetic - All samples information, formated by 'methylKit', in a 'methylBase' format (for demo purpose).
On BioConductor:methInheritSim-1.27.0(bioc 3.20)methInheritSim-1.26.0(bioc 3.19)
Last updated 2 months agofrom:85df36187c
Exports:runSim
Dependencies:abindaskpassbbmlebdsmatrixBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitopsclicodacodetoolscolorspacecpp11crayoncurldata.tableDelayedArrayemdbookexpmfansifarverfastsegformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesggplot2gluegtablegtoolshttrIRangesisobandjsonliteKernSmoothlabelinglambda.rlatticelifecyclelimmamagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmethylKitmgcvmimemsmmunsellmvtnormnlmenumDerivopensslpillarpkgconfigplyrqvalueR.methodsS3R.ooR.utilsR6RColorBrewerRcppRCurlreshape2restfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorsscalessnowSparseArraystatmodstringistringrSummarizedExperimentsurvivalsystibbleUCSC.utilsutf8vctrsviridisLitewithrXMLXVectoryamlzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| methInheritSim: Simulating Whole-Genome Inherited Bisulphite Sequencing Data | methInheritSim-package methInheritSim |
| A 'list' containing methylation information used by some internal functions (for demo purpose. | dataSimExample |
| Simulate a multigeneration methylation experiment with inheritance | runSim |
| All samples information, formated by 'methylKit', in a 'methylBase' format (for demo purpose). | samplesForChrSynthetic |
