1 Introduction | 2 Using Messina to construct optimal diagnostic classifiers | 3 Detecting differential expression in the presence of outliers | 4 Identifying the best features to predict survival outcome | 5 Session info
Package: messina 1.49.0
Mark Pinese
messina: Single-gene classifiers and outlier-resistant detection of differential expression for two-group and survival problems
Messina is a collection of algorithms for constructing optimally robust single-gene classifiers, and for identifying differential expression in the presence of outliers or unknown sample subgroups. The methods have application in identifying lead features to develop into clinical tests (both diagnostic and prognostic), and in identifying differential expression when a fraction of samples show unusual patterns of expression.
Authors:
messina_1.49.0.tar.gz
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messina_1.49.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
messina/json (API)
| # Install 'messina' in R: |
| install.packages('messina', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- kirc.exprs - Example TCGA KIRC RNAseq expression and survival data
- kirc.surv - Example TCGA KIRC RNAseq expression and survival data
On BioConductor:messina-1.49.0(bioc 3.24)messina-1.48.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
geneexpressiondifferentialexpressionbiomedicalinformaticsclassificationsurvivalcpp
Last updated from:1d3b0924cd. Checks:4 WARNING, 8 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 160 | ||
| linux-devel-arm64 | NOTE | 228 | ||
| linux-devel-x86_64 | NOTE | 277 | ||
| source / vignettes | OK | 264 | ||
| linux-release-arm64 | NOTE | 214 | ||
| linux-release-x86_64 | NOTE | 231 | ||
| macos-release-arm64 | NOTE | 131 | ||
| macos-release-x86_64 | NOTE | 243 | ||
| macos-oldrel-arm64 | NOTE | 149 | ||
| macos-oldrel-x86_64 | NOTE | 399 | ||
| windows-devel | WARNING | 216 | ||
| windows-release | WARNING | 200 | ||
| windows-oldrel | WARNING | 211 | ||
| wasm-release | OK | 163 |
Exports:messinamessinaDEmessinaSurvmessinaTopResultsplotshow
Dependencies:clicodetoolscpp11farverforeachggplot2gluegtableisobanditeratorslabelinglatticelifecycleMatrixplyrR6RColorBrewerRcpprlangS7scalessurvivalvctrsviridisLitewithr
