The Problem | Importing data and beginning the analysis | Extracting the Y chromosome probe data | Predicting the sex of samples | Visualizing the massiR analysis data | Check for potential sex bias using the dip test | Performing massiR analysis with an ExpressionSet object | Using the included massiR Y chromosome probe lists | Using biomaRt to obtain y chromosome probe lists | References
Package: massiR 1.49.0
Sam Buckberry
massiR: massiR: MicroArray Sample Sex Identifier
Predicts the sex of samples in gene expression microarray datasets
Authors:
massiR_1.49.0.tar.gz
massiR_1.49.0.zip(r-4.7)massiR_1.49.0.zip(r-4.6)massiR_1.49.0.zip(r-4.5)
massiR_1.49.0.tgz(r-4.6-any)massiR_1.49.0.tgz(r-4.5-any)
massiR_1.49.0.tar.gz(r-4.7-any)massiR_1.49.0.tar.gz(r-4.6-any)
massiR_1.49.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
massiR/json (API)
| # Install 'massiR' in R: |
| install.packages('massiR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- massi.eset - Massi.eset
- massi.test.dataset - The massi test dataset
- massi.test.probes - The massi test probes
- y.probes - Y chromosome probe list
On BioConductor:massiR-1.49.0(bioc 3.24)massiR-1.48.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwaremicroarraygeneexpressionclusteringclassificationqualitycontrol
Last updated from:d50a6e6960. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 138 | ||
| linux-devel-x86_64 | NOTE | 155 | ||
| source / vignettes | OK | 167 | ||
| linux-release-x86_64 | NOTE | 149 | ||
| macos-release-arm64 | NOTE | 90 | ||
| macos-oldrel-arm64 | NOTE | 86 | ||
| windows-devel | NOTE | 89 | ||
| windows-release | NOTE | 75 | ||
| windows-oldrel | NOTE | 85 | ||
| wasm-release | OK | 108 |
Exports:massi_clustermassi_cluster_plotmassi_dipmassi_selectmassi_ymassi_y_plot
Dependencies:BiobaseBiocGenericsbitopscaToolsclusterdiptestgenericsgplotsgtoolsKernSmooth
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| massiR: a microarry Gene Expression Sample Sex Identifier | massi-package massi |
| massi_cluster | massi_cluster |
| massi_cluster_plot | massi_cluster_plot |
| massi_dip | massi_dip |
| massi_select | massi_select |
| massi_y | massi_y |
| massi_y_plot | massi_y_plot |
| massi.eset | massi.eset |
| The massi test dataset | massi.test.dataset |
| The massi test probes | massi.test.probes |
| Y chromosome probe list | y.probes |