Introduction | Identification of BAD probes | Removal of BAD probes and estimation of expression values
Package: maskBAD 1.57.0
Michael Dannemann
maskBAD: Masking probes with binding affinity differences
Package includes functions to analyze and mask microarray expression data.
Authors:
maskBAD_1.57.0.tar.gz
maskBAD_1.57.0.zip(r-4.7)maskBAD_1.57.0.zip(r-4.6)maskBAD_1.57.0.zip(r-4.5)
maskBAD_1.57.0.tgz(r-4.6-any)maskBAD_1.57.0.tgz(r-4.5-any)
maskBAD_1.57.0.tar.gz(r-4.7-any)maskBAD_1.57.0.tar.gz(r-4.6-any)
maskBAD_1.57.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
maskBAD/json (API)
| # Install 'maskBAD' in R: |
| install.packages('maskBAD', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- exmask - Output object of the function mask
- newAffyBatch - AffyBatch with reduced genes
- newCdf - Object of type environment
- sequenceMask - Object containing sequence information for probes.
On BioConductor:maskBAD-1.57.0(bioc 3.24)maskBAD-1.56.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:729bc1d801. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 173 | ||
| linux-devel-x86_64 | NOTE | 250 | ||
| source / vignettes | OK | 237 | ||
| linux-release-x86_64 | NOTE | 219 | ||
| macos-release-arm64 | NOTE | 148 | ||
| macos-oldrel-arm64 | NOTE | 133 | ||
| windows-devel | NOTE | 385 | ||
| windows-release | NOTE | 433 | ||
| windows-oldrel | NOTE | 411 | ||
| wasm-release | OK | 114 |
Exports:maskoverlapExprExtMasksplotProbeprepareMaskedAffybatch
Dependencies:affyaffyioBiobaseBiocGenericsBiocManagerBiostringscrayongcrmagenericsIRangespreprocessCoreS4VectorsSeqinfoXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Output object of the function mask | exmask |
| AffyBatch with reduced genes | newAffyBatch |
| Object of type environment | newCdf |
| Object containing sequence information for probes. | sequenceMask |