Package: magpie 1.13.0

Daoyu Duan

magpie: MeRIP-Seq data Analysis for Genomic Power Investigation and Evaluation

This package aims to perform power analysis for the MeRIP-seq study. It calculates FDR, FDC, power, and precision under various study design parameters, including but not limited to sample size, sequencing depth, and testing method. It can also output results into .xlsx files or produce corresponding figures of choice.

Authors:Daoyu Duan [aut, cre], Zhenxing Guo [aut]

magpie_1.13.0.tar.gz
magpie_1.13.0.zip(r-4.7)magpie_1.13.0.zip(r-4.6)magpie_1.13.0.zip(r-4.5)
magpie_1.13.0.tgz(r-4.6-any)magpie_1.13.0.tgz(r-4.5-any)
magpie_1.13.0.tar.gz(r-4.7-any)magpie_1.13.0.tar.gz(r-4.6-any)
magpie_1.13.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
magpie/json (API)
NEWS

# Install 'magpie' in R:
install.packages('magpie', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dxd429/magpie/issues

Datasets:
  • power.test - Power calculation results for GSE46705
  • power.test - Power calculation results for GSE46705
  • power.test - Power calculation results for GSE46705
  • power.test - Power calculation results for GSE46705
  • power.test - Power calculation results for GSE46705
  • power.test - Power calculation results for GSE46705

On BioConductor:magpie-1.13.0(bioc 3.24)magpie-1.12.0(bioc 3.23)

epitranscriptomicsdifferentialmethylationsequencingrnaseqsoftware

4.61 score 41 scripts 316 downloads 8 exports 90 dependencies

Last updated from:08d47729a7. Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE218
linux-devel-x86_64WARNING422
source / vignettesOK329
linux-release-x86_64WARNING400
macos-release-arm64WARNING330
macos-oldrel-arm64WARNING314
windows-develWARNING306
windows-releaseWARNING331
windows-oldrelWARNING312
wasm-releaseOK180

Exports:plotAllplotAll_StrataplotResplotStratapowerEvalquickPowerwriteToxlsxwriteToxlsx_strata

Dependencies:abindAnnotationDbiaodaskpassBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobcachemcigarilloclicodetoolscpp11crayoncurlDBIDelayedArrayDESeq2farverfastmapformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegtablehttrIRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelifecyclelocfitmagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslopenxlsxpkgconfigplyrpngR6RColorBrewerRcppRcppArmadilloRCurlreshape2restfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsS7scalesSeqinfosnowSparseArraystringistringrSummarizedExperimentsysTRESSvctrsviridisLitewithrXMLXVectoryamlzip

magpie Package User's Guide

Daoyu Duan, Zhenxing Guo

Rendered frommagpie.Rmdusingknitr::rmarkdownon Jun 07 2026.

Last update: 2023-02-19
Started: 2023-01-13