Package: magpie 1.7.0

Daoyu Duan

magpie: MeRIP-Seq data Analysis for Genomic Power Investigation and Evaluation

This package aims to perform power analysis for the MeRIP-seq study. It calculates FDR, FDC, power, and precision under various study design parameters, including but not limited to sample size, sequencing depth, and testing method. It can also output results into .xlsx files or produce corresponding figures of choice.

Authors:Daoyu Duan [aut, cre], Zhenxing Guo [aut]

magpie_1.7.0.tar.gz
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magpie.pdf |magpie.html✨
magpie/json (API)
NEWS

# Install 'magpie' in R:
install.packages('magpie', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/dxd429/magpie/issues

Datasets:
  • power.test - Power calculation results for GSE46705
  • power.test - Power calculation results for GSE46705
  • power.test - Power calculation results for GSE46705
  • power.test - Power calculation results for GSE46705
  • power.test - Power calculation results for GSE46705
  • power.test - Power calculation results for GSE46705

On BioConductor:magpie-1.7.0(bioc 3.21)magpie-1.6.0(bioc 3.20)

epitranscriptomicsdifferentialmethylationsequencingrnaseqsoftware

4.78 score 40 scripts 119 downloads 8 exports 100 dependencies

Last updated 23 days agofrom:c0a41dc913. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 18 2024
R-4.5-winWARNINGNov 18 2024
R-4.5-linuxWARNINGNov 18 2024
R-4.4-winWARNINGNov 18 2024
R-4.4-macWARNINGNov 18 2024
R-4.3-winWARNINGNov 18 2024
R-4.3-macWARNINGNov 18 2024

Exports:plotAllplotAll_StrataplotResplotStratapowerEvalquickPowerwriteToxlsxwriteToxlsx_strata

Dependencies:abindAnnotationDbiaodaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobcachemclicodetoolscolorspacecpp11crayoncurlDBIDelayedArrayDESeq2fansifarverfastmapformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegtablehttrIRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelifecyclelocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslopenxlsxpillarpkgconfigplogrplyrpngR6RColorBrewerRcppRcppArmadilloRCurlreshape2restfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsscalessnowSparseArraystringistringrSummarizedExperimentsystibbleTRESSUCSC.utilsutf8vctrsviridisLitewithrXMLXVectoryamlzipzlibbioc

magpie Package User's Guide

Daoyu Duan, Zhenxing Guo

Rendered frommagpie.Rmdusingknitr::rmarkdownon Nov 18 2024.

Last update: 2023-02-19
Started: 2023-01-13