Package: maaslin3 0.99.4
William Nickols
maaslin3: "Refining and extending generalized multivariate linear models for meta-omic association discovery"
MaAsLin 3 refines and extends generalized multivariate linear models for meta-omicron association discovery. It finds abundance and prevalence associations between microbiome meta-omics features and complex metadata in population-scale epidemiological studies. The software includes multiple analysis methods (including support for multiple covariates, repeated measures, and ordered predictors), filtering, normalization, and transform options to customize analysis for your specific study.
Authors:
maaslin3_0.99.4.tar.gz
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maaslin3_0.99.4.tgz(r-4.5-any)maaslin3_0.99.4.tgz(r-4.4-any)
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maaslin3_0.99.4.tgz(r-4.4-emscripten)
maaslin3.pdf |maaslin3.html✨
maaslin3/json (API)
NEWS
| # Install 'maaslin3' in R: |
| install.packages('maaslin3', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/biobakery/maaslin3/issues
On BioConductor:maaslin3-0.99.4(bioc 3.21)
metagenomicssoftwaremicrobiomenormalizationmultiplecomparison
Last updated 19 days agofrom:05599a9478. Checks:5 OK, 1 WARNING. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 01 2025 |
| R-4.5-win | OK | Feb 01 2025 |
| R-4.5-mac | WARNING | Feb 01 2025 |
| R-4.5-linux | OK | Feb 01 2025 |
| R-4.4-win | OK | Feb 01 2025 |
| R-4.4-mac | OK | Feb 01 2025 |
Exports:maaslin_check_argumentsmaaslin_check_formulamaaslin_compute_formulamaaslin_contrast_testmaaslin_filtermaaslin_fitmaaslin_log_argumentsmaaslin_normalizemaaslin_plot_resultsmaaslin_plot_results_from_outputmaaslin_process_metadatamaaslin_read_datamaaslin_reorder_datamaaslin_transformmaaslin_write_resultsmaaslin_write_results_lefse_formatmaaslin3preprocess_dna_mtx
Dependencies:abindapeaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbootclicodetoolscolorspacecpp11crayoncurlDelayedArraydigestdplyrfansifarverformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgetoptggnewscaleggplot2gluegtablehttrIRangesisobandjsonlitelabelinglambda.rlatticelazyevallifecyclelme4lmerTestloggingmagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimeminqamultcompmunsellmvtnormnlmenloptrnumDerivopenssloptparsepatchworkpbapplypillarpkgconfigpurrrR6rbibutilsRColorBrewerRcppRcppEigenRdpackreformulasrlangS4ArraysS4VectorssandwichscalesSingleCellExperimentsnowSparseArraystringistringrSummarizedExperimentsurvivalsysTH.datatibbletidyrtidyselecttidytreetreeioTreeSummarizedExperimentUCSC.utilsutf8vctrsviridisLitewithrXVectoryulab.utilszoo
