Package: m6Aboost 1.13.0

You Zhou

m6Aboost: m6Aboost

This package can help user to run the m6Aboost model on their own miCLIP2 data. The package includes functions to assign the read counts and get the features to run the m6Aboost model. The miCLIP2 data should be stored in a GRanges object. More details can be found in the vignette.

Authors:You Zhou [aut, cre], Kathi Zarnack [aut]

m6Aboost_1.13.0.tar.gz
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m6Aboost_1.13.0.tgz(r-4.4-any)m6Aboost_1.13.0.tgz(r-4.3-any)
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m6Aboost.pdf |m6Aboost.html✨
m6Aboost/json (API)
NEWS

# Install 'm6Aboost' in R:
install.packages('m6Aboost', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/zarnackgroup/m6aboost/issues

On BioConductor:m6Aboost-1.13.0(bioc 3.21)m6Aboost-1.12.0(bioc 3.20)

sequencingepigeneticsgeneticsexperimenthubsoftware

4.30 score 2 stars 5 scripts 159 downloads 4 exports 159 dependencies

Last updated 3 months agofrom:123d4ec07b. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 19 2025
R-4.5-winOKJan 21 2025
R-4.5-linuxOKJan 19 2025
R-4.4-winOKJan 19 2025
R-4.4-macOKJan 19 2025
R-4.3-winOKJan 19 2025
R-4.3-macOKJan 19 2025

Exports:CtoTAssignmentm6AboostpreparingDatatruncationAssignment

Dependencies:abindadabagAnnotationDbiAnnotationHubaskpassbase64encBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionBiostringsbitbit64bitopsblobBSgenomebslibcachemcaretclasscliclockcodetoolscolorspaceConsRankcpp11crayoncurldata.tableDBIdbplyrDelayedArraydiagramdigestdoParalleldplyre1071evaluateExperimentHubfansifarverfastmapfilelockfontawesomeforeachformatRfsfutile.loggerfutile.optionsfuturefuture.applygenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesggplot2globalsgluegowergtablegtoolshardhathighrhtmltoolshtmlwidgetshttripredIRangesisobanditeratorsjquerylibjsonliteKEGGRESTKernSmoothknitrlabelinglambda.rlatticelavalifecyclelistenvlubridatemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeModelMetricsmunsellnlmennetnumDerivopensslparallellypillarpkgconfigplogrplyrpngpROCprodlimprogressrproxypurrrR6rappdirsRColorBrewerRcppRCurlrecipesreshape2restfulrrglRhtslibrjsonrlangrlistrmarkdownrpartRsamtoolsRSQLitertracklayerS4ArraysS4VectorssassscalesshapesnowSparseArraySQUAREMstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttimechangetimeDatetinytextzdbUCSC.utilsutf8vctrsviridisLitewithrxfunXMLXVectoryaml

Predicting m6A sites from miCLIP2 data with m6Aboost

You Zhou, Kathi Zarnack

Rendered fromm6AboosVignettes.Rmdusingknitr::rmarkdownon Jan 19 2025.

Last update: 2021-06-03
Started: 2021-05-27