Package: m6Aboost 1.19.0

You Zhou

m6Aboost: m6Aboost

This package can help user to run the m6Aboost model on their own miCLIP2 data. The package includes functions to assign the read counts and get the features to run the m6Aboost model. The miCLIP2 data should be stored in a GRanges object. More details can be found in the vignette.

Authors:You Zhou [aut, cre], Kathi Zarnack [aut]

m6Aboost_1.19.0.tar.gz
m6Aboost_1.19.0.zip(r-4.7)m6Aboost_1.19.0.zip(r-4.6)m6Aboost_1.19.0.zip(r-4.5)
m6Aboost_1.19.0.tgz(r-4.6-any)m6Aboost_1.19.0.tgz(r-4.5-any)
m6Aboost_1.19.0.tar.gz(r-4.7-any)m6Aboost_1.19.0.tar.gz(r-4.6-any)
m6Aboost_1.19.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
m6Aboost/json (API)
NEWS

# Install 'm6Aboost' in R:
install.packages('m6Aboost', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/zarnackgroup/m6aboost/issues

On BioConductor:m6Aboost-1.19.0(bioc 3.24)m6Aboost-1.18.0(bioc 3.23)

sequencingepigeneticsgeneticsexperimenthubsoftware

4.65 score 3 stars 5 scripts 286 downloads 4 exports 142 dependencies

Last updated from:63cb5e5f01. Checks:1 NOTE, 9 OK. Indexed: yes.

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bioc-checksNOTE282
linux-devel-x86_64OK485
source / vignettesOK375
linux-release-x86_64OK467
macos-release-arm64OK331
macos-oldrel-arm64OK268
windows-develOK407
windows-releaseOK383
windows-oldrelOK374
wasm-releaseOK222

Exports:CtoTAssignmentm6AboostpreparingDatatruncationAssignment

Dependencies:abindadabagAnnotationDbiAnnotationHubaskpassBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionBiostringsbitbit64bitopsblobBSgenomecachemcaretcigarilloclasscliclockcodetoolsConsRankcpp11crayoncurldata.tableDBIdbplyrDelayedArraydiagramdigestdoParalleldplyre1071ExperimentHubfarverfastmapfilelockforeachformatRfutile.loggerfutile.optionsfuturefuture.applygenericsGenomicAlignmentsGenomicRangesggplot2globalsgluegowergtablegtoolshardhathttrhttr2ipredIRangesisobanditeratorsjsonliteKEGGRESTKernSmoothlabelinglambda.rlatticelavalifecyclelistenvlubridatemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimeModelMetricsnlmennetnumDerivopensslparallellypillarpkgconfigplyrpngpROCprodlimprogressrproxypurrrR6rappdirsRColorBrewerRcppRCurlrecipesreshape2restfulrRhtslibrjsonrlangrlistrpartRsamtoolsRSQLitertracklayerS4ArraysS4VectorsS7scalesSeqinfoshapesnowSparseArraysparsevctrsSQUAREMstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttimechangetimeDatetzdbutf8vctrsviridisLitewithrXMLXVectoryaml

Predicting m6A sites from miCLIP2 data with m6Aboost

You Zhou, Kathi Zarnack

Rendered fromm6AboosVignettes.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2021-06-03
Started: 2021-05-27