Package: m6Aboost 1.13.0

You Zhou

m6Aboost: m6Aboost

This package can help user to run the m6Aboost model on their own miCLIP2 data. The package includes functions to assign the read counts and get the features to run the m6Aboost model. The miCLIP2 data should be stored in a GRanges object. More details can be found in the vignette.

Authors:You Zhou [aut, cre], Kathi Zarnack [aut]

m6Aboost_1.13.0.tar.gz
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m6Aboost.pdf |m6Aboost.html✨
m6Aboost/json (API)
NEWS

# Install 'm6Aboost' in R:
install.packages('m6Aboost', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/zarnackgroup/m6aboost/issues

On BioConductor:m6Aboost-1.13.0(bioc 3.21)m6Aboost-1.12.0(bioc 3.20)

sequencingepigeneticsgeneticsexperimenthubsoftware

4.30 score 2 stars 5 scripts 198 downloads 4 exports 160 dependencies

Last updated 5 months agofrom:123d4ec07b. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 20 2025
R-4.5-winOKMar 20 2025
R-4.5-macOKMar 20 2025
R-4.5-linuxOKMar 20 2025
R-4.4-winOKMar 20 2025
R-4.4-macOKMar 20 2025
R-4.4-linuxOKMar 20 2025
R-4.3-winOKMar 20 2025
R-4.3-macOKMar 20 2025

Exports:CtoTAssignmentm6AboostpreparingDatatruncationAssignment

Dependencies:abindadabagAnnotationDbiAnnotationHubaskpassbase64encBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionBiostringsbitbit64bitopsblobBSgenomebslibcachemcaretclasscliclockcodetoolscolorspaceConsRankcpp11crayoncurldata.tableDBIdbplyrDelayedArraydiagramdigestdoParalleldplyre1071evaluateExperimentHubfansifarverfastmapfilelockfontawesomeforeachformatRfsfutile.loggerfutile.optionsfuturefuture.applygenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesggplot2globalsgluegowergtablegtoolshardhathighrhtmltoolshtmlwidgetshttripredIRangesisobanditeratorsjquerylibjsonliteKEGGRESTKernSmoothknitrlabelinglambda.rlatticelavalifecyclelistenvlubridatemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeModelMetricsmunsellnlmennetnumDerivopensslparallellypillarpkgconfigplogrplyrpngpROCprodlimprogressrproxypurrrR6rappdirsRColorBrewerRcppRCurlrecipesreshape2restfulrrglRhtslibrjsonrlangrlistrmarkdownrpartRsamtoolsRSQLitertracklayerS4ArraysS4VectorssassscalesshapesnowSparseArraysparsevctrsSQUAREMstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttimechangetimeDatetinytextzdbUCSC.utilsutf8vctrsviridisLitewithrxfunXMLXVectoryaml

Predicting m6A sites from miCLIP2 data with m6Aboost

You Zhou, Kathi Zarnack

Rendered fromm6AboosVignettes.Rmdusingknitr::rmarkdownon Mar 20 2025.

Last update: 2021-06-03
Started: 2021-05-27