Package: lmdme 1.49.0
Cristobal Fresno
lmdme: Linear Model decomposition for Designed Multivariate Experiments
linear ANOVA decomposition of Multivariate Designed Experiments implementation based on limma lmFit. Features: i)Flexible formula type interface, ii) Fast limma based implementation, iii) p-values for each estimated coefficient levels in each factor, iv) F values for factor effects and v) plotting functions for PCA and PLS.
Authors:
lmdme_1.49.0.tar.gz
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lmdme_1.49.0.tgz(r-4.4-any)lmdme_1.49.0.tgz(r-4.3-any)
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lmdme.pdf |lmdme.html✨
lmdme/json (API)
NEWS
| # Install 'lmdme' in R: |
| install.packages('lmdme', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:lmdme-1.49.0(bioc 3.21)lmdme-1.48.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarrayonechanneltwochannelvisualizationdifferentialexpressionexperimentdatacancer
Last updated 2 months agofrom:2d18be31ab. Checks:OK: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 29 2024 |
| R-4.5-win | WARNING | Nov 29 2024 |
| R-4.5-linux | WARNING | Nov 29 2024 |
| R-4.4-win | WARNING | Nov 29 2024 |
| R-4.4-mac | WARNING | Nov 29 2024 |
| R-4.3-win | WARNING | Nov 29 2024 |
| R-4.3-mac | WARNING | Nov 29 2024 |
Exports:biplotcoefcoefficientscomponentscomponentsTypedecompositiondesignF.p.valuesfittedfitted.valuesleveragelmdmeloadingplotmodelmodelDecompositionp.adjustp.valuespermutationprintresidresidualsscreeplotshowsummary
Dependencies:limmaplsstatmodstemHypoxia
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Plot a 'biplot' of a lmdme object | biplot biplot,lmdme-method |
| 'decomposition' of lmdme object | decomposition decomposition,lmdme-method decomposition-methods |
| Getters for lmdme object | coef coef,lmdme-method coefficients coefficients,lmdme-method components components,lmdme-method components-methods componentsType componentsType,lmdme-method componentsType-methods design design,lmdme-method design-methods F.p.values F.p.values,lmdme-method F.p.values-methods fitted fitted,lmdme-method fitted.values fitted.values,lmdme-method model model,lmdme-method model-methods modelDecomposition modelDecomposition,lmdme-method modelDecomposition-methods p.values p.values,lmdme-method p.values-methods resid resid,lmdme-method residuals residuals,lmdme-method |
| 'leverage' test of lmdme objects | leverage leverage,lmdme-method leverage-methods |
| High level constructor of lmdme class object | lmdme lmdme,formula,ANY,data.frame-method lmdme-methods |
| lmdme S4 class: Linear Model decomposition for Designed Multivariate Experiments. | lmdme-class |
| 'loadingplot' of interaction PCA decomposed lmdme object | loadingplot loadingplot,lmdme-method |
| 'p.adjust' of p-values for Multiple Test Comparison Corrections | lmdme-padjust p.adjust p.adjust,ANY-method p.adjust,lmdme-method p.adjust-methods |
| 'permutation' of the specified lmdme object | permutation permutation,formula,data.frame,data.frame-method permutation-methods |
| 'Show', 'Print' or 'Summary' a lmdme object | print print,lmdme-method show show,lmdme-method summary summary,lmdme-method |
| Plot a 'screeplot' of a PCA decomposed lmdme object | screeplot screeplot,lmdme-method |