Package: limpca 1.1.0

Manon Martin

limpca: An R package for the linear modeling of high-dimensional designed data based on ASCA/APCA family of methods

This package has for objectives to provide a method to make Linear Models for high-dimensional designed data. limpca applies a GLM (General Linear Model) version of ASCA and APCA to analyse multivariate sample profiles generated by an experimental design. ASCA/APCA provide powerful visualization tools for multivariate structures in the space of each effect of the statistical model linked to the experimental design and contrarily to MANOVA, it can deal with mutlivariate datasets having more variables than observations. This method can handle unbalanced design.

Authors:Bernadette Govaerts [aut, ths], Sebastien Franceschini [ctb], Robin van Oirbeek [ctb], Michel Thiel [aut], Pascal de Tullio [dtc], Manon Martin [aut, cre], Nadia Benaiche [ctb]

limpca_1.1.0.tar.gz
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limpca.pdf |limpca.html✨
limpca/json (API)
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Bug tracker:https://github.com/manonmartin/limpca/issues

On BioConductor:limpca-1.1.0(bioc 3.20)limpca-1.0.0(bioc 3.19)

bioconductor-package

22 exports 1.64 score 132 dependencies

Last updated 2 months agofrom:d7869a9d1a

Exports:data2LmpDataListlmpBootstrapTestslmpContributionslmpEffectMatriceslmpEffectPlotlmpLoading1dPlotlmpLoading2dPlotlmpModelMatrixlmpPcaEffectslmpScorePlotlmpScoreScatterPlotMlmpScreePlotpcaBySvdpcaLoading1dPlotpcaLoading2dPlotpcaScorePlotpcaScreePlotplotDesignplotLineplotMeansplotScatterplotScatterM

Dependencies:abindaskpassbackportsbase64encBiobaseBiocGenericsbitbit64blobbroombslibcachemcallrcellrangerclicliprcodetoolscolorspaceconflictedcpp11crayoncurldata.tableDBIdbplyrDelayedArraydigestdoParalleldplyrdtplyrevaluatefansifarverfastmapfontawesomeforcatsforeachfsgarglegenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2ggrepelggscigluegoogledrivegooglesheets4gtablehavenhighrhmshtmltoolshttridsIRangesisobanditeratorsjquerylibjsonliteknitrlabelinglatticelifecyclelubridatemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemodelrmunsellnlmeopensslpillarpkgconfigplyrprettyunitsprocessxprogresspspurrrR6raggrappdirsRColorBrewerRcppreadrreadxlrematchrematch2reprexreshape2rlangrmarkdownrstudioapirvestS4ArraysS4VectorssassscalesselectrSparseArraystringistringrSummarizedExperimentsyssystemfontstextshapingtibbletidyrtidyselecttidyversetimechangetinytextzdbUCSC.utilsutf8uuidvctrsviridisLitevroomwithrxfunxml2XVectoryamlzlibbioc