Package: knowYourCG 1.1.0
Goldberg David
knowYourCG: Functional analysis of DNA methylome datasets
knowYourCG automates the functional analysis of DNA methylation data. The package tests the enrichment of discrete CpG probes across thousands of curated biological and technical features. GSEA-like analysis can be performed on continuous methylation data query sets. knowYourCG can also take beta matrices as input to perform feature aggregation over the curated database sets.
Authors:
knowYourCG_1.1.0.tar.gz
knowYourCG_1.1.0.zip(r-4.5)knowYourCG_1.1.0.zip(r-4.4)knowYourCG_1.1.0.zip(r-4.3)
knowYourCG_1.1.0.tgz(r-4.4-any)knowYourCG_1.1.0.tgz(r-4.3-any)
knowYourCG_1.1.0.tar.gz(r-4.5-noble)knowYourCG_1.1.0.tar.gz(r-4.4-noble)
knowYourCG_1.1.0.tgz(r-4.4-emscripten)knowYourCG_1.1.0.tgz(r-4.3-emscripten)
knowYourCG.pdf |knowYourCG.html✨
knowYourCG/json (API)
NEWS
| # Install 'knowYourCG' in R: |
| install.packages('knowYourCG', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/zhou-lab/knowyourcg/issues
On BioConductor:knowYourCG-1.1.0(bioc 3.20)knowYourCG-1.0.0(bioc 3.19)
Last updated 2 months agofrom:4077bd913d
Exports:aggregateTestEnrichmentsannoProbesbuildGeneDBsdbStatsgetDBslistDBGroupstestEnrichmenttestEnrichmentSEAtestGOtestProbeProximity
Dependencies:AnnotationDbiAnnotationHubaskpassBiobaseBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicliprcpp11crayoncurlDBIdbplyrdplyrExperimentHubfansifastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehmshttrIRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigplogrplyrpngprettyunitsprogresspurrrR6rappdirsRcppreadrreshape2rlangRSQLiteS4VectorssesameDatastringistringrsystibbletidyrtidyselecttzdbUCSC.utilsutf8vctrsvroomwithrXVectoryamlzlibbioc
