Package: keggorthology 2.57.0
keggorthology: graph support for KO, KEGG Orthology
graphical representation of the Feb 2010 KEGG Orthology. The KEGG orthology is a set of pathway IDs that are not to be confused with the KEGG ortholog IDs.
Authors:
keggorthology_2.57.0.tar.gz
keggorthology_2.55.0.zip(r-4.5)keggorthology_2.57.0.zip(r-4.4)keggorthology_2.57.0.zip(r-4.3)
keggorthology_2.57.0.tgz(r-4.4-any)keggorthology_2.57.0.tgz(r-4.3-any)
keggorthology_2.57.0.tar.gz(r-4.4-noble)
keggorthology_2.57.0.tgz(r-4.4-emscripten)keggorthology_2.57.0.tgz(r-4.3-emscripten)
keggorthology.pdf |keggorthology.html✨
keggorthology/json (API)
# Install 'keggorthology' in R: |
install.packages('keggorthology', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- KOgraph - Create a graph from a specific data frame format for KEGG orthology
- keggOrthDF - Create a graph from a specific data frame format for KEGG orthology
On BioConductor:keggorthology-2.57.0(bioc 3.20)keggorthology-2.56.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:6669643c11
Exports:getKOprobesgetKOtagsindRenderkeggDF2graph
Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapGenomeInfoDbGenomeInfoDbDatagluegraphhgu95av2.dbhttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslorg.Hs.eg.dbpkgconfigplogrpngR6rlangRSQLiteS4VectorssysUCSC.utilsvctrsXVectorzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
obtain probe set IDs associated with a KO term | getKOprobes getKOtags |
indented textual rendering of nodes of a hierarchical graph | indRender |
create a graph from a specific data frame format for KEGG orthology | keggDF2graph keggOrthDF KOgraph |