Package: keggorthology 2.65.0

VJ Carey

keggorthology: graph support for KO, KEGG Orthology

graphical representation of the Feb 2010 KEGG Orthology. The KEGG orthology is a set of pathway IDs that are not to be confused with the KEGG ortholog IDs.

Authors:VJ Carey <[email protected]>

keggorthology_2.65.0.tar.gz
keggorthology_2.65.0.zip(r-4.7)keggorthology_2.65.0.zip(r-4.6)keggorthology_2.65.0.zip(r-4.5)
keggorthology_2.65.0.tgz(r-4.6-any)keggorthology_2.65.0.tgz(r-4.5-any)
keggorthology_2.65.0.tar.gz(r-4.7-any)keggorthology_2.65.0.tar.gz(r-4.6-any)
keggorthology_2.65.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
keggorthology/json (API)

# Install 'keggorthology' in R:
install.packages('keggorthology', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • keggOrthDF - Create a graph from a specific data frame format for KEGG orthology
  • KOgraph - Create a graph from a specific data frame format for KEGG orthology

On BioConductor:keggorthology-2.65.0(bioc 3.24)keggorthology-2.64.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

pathwaysgraphandnetworkvisualizationkegg

3.45 score 14 scripts 451 downloads 4 exports 38 dependencies

Last updated from:8c254fee83. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR178
linux-devel-x86_64NOTE285
source / vignettesOK367
linux-release-x86_64NOTE267
macos-release-arm64NOTE194
macos-oldrel-arm64NOTE212
windows-develNOTE172
windows-releaseNOTE157
windows-oldrelNOTE171
wasm-releaseOK151

Exports:getKOprobesgetKOtagsindRenderkeggDF2graph

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenericsgluegraphhgu95av2.dbhttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslorg.Hs.eg.dbpkgconfigpngR6rlangRSQLiteS4VectorsSeqinfosysvctrsXVector

keggorthology overview

Rendered fromkeggorth.Rnwusingutils::Sweaveon Jun 05 2026.

Last update: 2013-10-18
Started: 2013-10-18