Package: keggorthology 2.59.0

VJ Carey

keggorthology: graph support for KO, KEGG Orthology

graphical representation of the Feb 2010 KEGG Orthology. The KEGG orthology is a set of pathway IDs that are not to be confused with the KEGG ortholog IDs.

Authors:VJ Carey <[email protected]>

keggorthology_2.59.0.tar.gz
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keggorthology.pdf |keggorthology.html✨
keggorthology/json (API)

# Install 'keggorthology' in R:
install.packages('keggorthology', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • KOgraph - Create a graph from a specific data frame format for KEGG orthology
  • keggOrthDF - Create a graph from a specific data frame format for KEGG orthology

On BioConductor:keggorthology-2.59.0(bioc 3.21)keggorthology-2.58.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

pathwaysgraphandnetworkvisualizationkegg

3.48 score 8 scripts 466 downloads 4 exports 42 dependencies

Last updated 2 months agofrom:1023f18a9c. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 07 2024
R-4.5-winNOTEDec 07 2024
R-4.5-linuxNOTEDec 07 2024
R-4.4-winNOTEDec 07 2024
R-4.4-macNOTEDec 07 2024
R-4.3-winNOTEDec 07 2024
R-4.3-macNOTEDec 07 2024

Exports:getKOprobesgetKOtagsindRenderkeggDF2graph

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenericsGenomeInfoDbGenomeInfoDbDatagluegraphhgu95av2.dbhttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslorg.Hs.eg.dbpkgconfigplogrpngR6rlangRSQLiteS4VectorssysUCSC.utilsvctrsXVectorzlibbioc

keggorthology overview

Rendered fromkeggorth.Rnwusingutils::Sweaveon Dec 07 2024.

Last update: 2013-10-18
Started: 2013-10-18