Package: interacCircos 1.23.0

Zhe Cui

interacCircos: The Generation of Interactive Circos Plot

Implement in an efficient approach to display the genomic data, relationship, information in an interactive circular genome(Circos) plot. 'interacCircos' are inspired by 'circosJS', 'BioCircos.js' and 'NG-Circos' and we integrate the modules of 'circosJS', 'BioCircos.js' and 'NG-Circos' into this R package, based on 'htmlwidgets' framework.

Authors:Zhe Cui [aut, cre]

interacCircos_1.23.0.tar.gz
interacCircos_1.23.0.zip(r-4.7)interacCircos_1.23.0.zip(r-4.6)interacCircos_1.23.0.zip(r-4.5)
interacCircos_1.23.0.tgz(r-4.6-any)interacCircos_1.23.0.tgz(r-4.5-any)
interacCircos_1.23.0.tar.gz(r-4.7-any)interacCircos_1.23.0.tar.gz(r-4.6-any)
interacCircos_1.23.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
interacCircos/json (API)

# Install 'interacCircos' in R:

install.packages('interacCircos', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

arcExample - Arc plot example data
bubbleExample - Bubble plot example data
chord.pExample - Example data of chord plot of circosJS
chordExample - Example data of chord plot of NG-Circos
cnvExample - Cnv module example data
geneExample - Gene plot example data
heatmapExample - Heatmap plot example data
hg19_ideogram - Ideogram for hg19
histogramExample - Histogram plot example data
lineExample - Line plot example data
linkExample - Link plot example data
lollipopExample - Lollipop plot example data
scatterExample - Scatter plot example data
snpExample - Snp plot example data
wigExample - Wig plot example data

On BioConductor:interacCircos-1.23.0(bioc 3.24)interacCircos-1.22.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

visualization

4.00 score 4 scripts 288 downloads 20 exports 29 dependencies

Last updated from:159ef8805d. Checks:1 WARNING, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	WARNING	147
linux-devel-x86_64	OK	192
source / vignettes	OK	180
linux-release-x86_64	OK	146
macos-release-arm64	OK	100
macos-oldrel-arm64	OK	72
windows-devel	OK	77
windows-release	OK	92
windows-oldrel	OK	78
wasm-release	OK	107

Exports:Circos CircosArc CircosAuxLine CircosBackground CircosBubble CircosChord CircosChord.p CircosCnv CircosGene CircosHeatmap CircosHistogram CircosLegend CircosLine CircosLink CircosLollipop CircosModuleList CircosScatter CircosSnp CircosText CircosWig

Dependencies:base64enc bslib cachem cli digest evaluate fastmap fontawesome fs highr htmltools htmlwidgets jquerylib jsonlite knitr lifecycle memoise mime plyr R6 rappdirs RColorBrewer Rcpp rlang rmarkdown sass tinytex xfun yaml

interacCircos

Rendered frominteracCircos.Rmdusingknitr::rmarkdown

Last update: 2021-04-10
Started: 2021-01-19

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Arc plot example data	arcExample
Bubble plot example data	bubbleExample
Example data of chord plot of circosJS	chord.pExample
Example data of chord plot of NG-Circos	chordExample
interacCircos	Circos
ARC module	CircosArc
AUXILIARYLINE module	CircosAuxLine
BACKGROUND module	CircosBackground
BUBBLE module	CircosBubble
CHORD module of NG-Circos	CircosChord
CHORD module of circosJS	CircosChord.p
CNV module	CircosCnv
GENE module	CircosGene
HEATMAP module	CircosHeatmap
HISTOGRAM module	CircosHistogram
LEGEND module	CircosLegend
LINE module	CircosLine
LINK module	CircosLink
LOLLIPOP module	CircosLollipop
Create a list of modules	+.CircosModuleList -.CircosModuleList CircosModuleList
SCATTER module	CircosScatter
SNP module	CircosSnp
Text module	CircosText
WIG module	CircosWig
Cnv module example data	cnvExample
Gene plot example data	geneExample
Heatmap plot example data	heatmapExample
Ideogram for hg19	hg19_ideogram
Histogram plot example data	histogramExample
Line plot example data	lineExample
Link plot example data	linkExample
Lollipop plot example data	lollipopExample
Scatter plot example data	scatterExample
Snp plot example data	snpExample
Wig plot example data	wigExample