Package: intansv 1.47.0

Wen Yao

intansv: Integrative analysis of structural variations

This package provides efficient tools to read and integrate structural variations predicted by popular softwares. Annotation and visulation of structural variations are also implemented in the package.

Authors:Wen Yao <[email protected]>

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intansv.pdf |intansv.html✨
intansv/json (API)
NEWS

# Install 'intansv' in R:
install.packages('intansv', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:intansv-1.47.0(bioc 3.21)intansv-1.46.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneticsannotationsequencingsoftware

4.48 score 2 scripts 246 downloads 3 mentions 11 exports 153 dependencies

Last updated 3 months agofrom:69fa786e51. Checks:1 OK, 6 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKDec 29 2024
R-4.5-winNOTEDec 31 2024
R-4.5-linuxNOTEDec 29 2024
R-4.4-winNOTEDec 31 2024
R-4.4-macNOTEDec 29 2024
R-4.3-winNOTENov 29 2024
R-4.3-macNOTEDec 29 2024

Exports:methodsMergeplotChromosomeplotRegionreadBreakDancerreadCnvnatorreadDellyreadLumpyreadPindelreadSoftSearchreadSvseqsvAnnotation

Dependencies:abindAnnotationDbiAnnotationFilteraskpassbackportsbase64encBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelbiomaRtBiostringsbiovizBasebitbit64bitopsblobBSgenomebslibcachemcheckmatecliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIdbplyrDelayedArraydichromatdigestdplyrensembldbevaluatefansifarverfastmapfilelockfontawesomeforcatsforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesGGallyggbioggplot2ggstatsgluegraphgridExtragtablehighrHmischmshtmlTablehtmltoolshtmlwidgetshttrhttr2IRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmennetopensslOrganismDbipatchworkpillarpkgconfigplogrplyrpngprettyunitsprogressProtGenericspurrrR6rappdirsRBGLRColorBrewerRcppRCurlreshape2restfulrRhtslibrjsonrlangrmarkdownrpartRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorssassscalessnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytextxdbmakerUCSC.utilsutf8VariantAnnotationvctrsviridisviridisLitewithrxfunXMLxml2XVectoryamlzlibbioc

An Introduction to intansv

Rendered fromintansvOverview.Rnwusingutils::Sweaveon Dec 29 2024.

Last update: 2020-04-14
Started: 2017-07-28