Package: intansv 1.53.0

Wen Yao

intansv: Integrative analysis of structural variations

This package provides efficient tools to read and integrate structural variations predicted by popular softwares. Annotation and visulation of structural variations are also implemented in the package.

Authors:Wen Yao <[email protected]>

intansv_1.53.0.tar.gz
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intansv_1.53.0.tgz(r-4.6-any)intansv_1.53.0.tgz(r-4.5-any)
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manual.pdf |manual.html✨
card.svg |card.png
intansv/json (API)
NEWS

# Install 'intansv' in R:
install.packages('intansv', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:intansv-1.53.0(bioc 3.24)intansv-1.52.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneticsannotationsequencingsoftware

4.48 score 3 scripts 476 downloads 3 mentions 11 exports 127 dependencies

Last updated from:171d3b6066. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR221
linux-devel-x86_64NOTE441
source / vignettesOK333
linux-release-x86_64NOTE470
macos-release-arm64NOTE425
macos-oldrel-arm64NOTE327
windows-develNOTE389
windows-releaseNOTE369
windows-oldrelNOTE389
wasm-releaseOK168

Exports:methodsMergeplotChromosomeplotRegionreadBreakDancerreadCnvnatorreadDellyreadLumpyreadPindelreadSoftSearchreadSvseqsvAnnotation

Dependencies:abindAnnotationDbiAnnotationFilteraskpassbackportsbase64encBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocManagerBiocParallelBiostringsbiovizBasebitbit64bitopsblobBSgenomebslibcachemcheckmatecigarillocliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIDelayedArraydichromatdigestensembldbevaluatefarverfastmapfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesggbioggplot2gluegraphgridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetshttrIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimennetopensslOrganismDbipkgconfigplyrpngProtGenericsR6rappdirsRBGLRColorBrewerRcppRCurlreshape2restfulrRhtslibrjsonrlangrmarkdownrpartRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraystringistringrSummarizedExperimentsystinytexUCSC.utilsVariantAnnotationvctrsviridisLitewithrxfunXMLXVectoryaml

An Introduction to intansv

Rendered fromintansvOverview.Rnwusingutils::Sweaveon May 30 2026.

Last update: 2020-04-14
Started: 2017-07-28