Package: immunogenViewer 1.7.0

Katharina Waury

immunogenViewer: Visualization and evaluation of protein immunogens

Plots protein properties and visualizes position of peptide immunogens within protein sequence. Allows evaluation of immunogens based on structural and functional annotations to infer suitability for antibody-based methods aiming to detect native proteins.

Authors:Katharina Waury [aut, cre]

immunogenViewer_1.7.0.tar.gz
immunogenViewer_1.7.0.zip(r-4.7)immunogenViewer_1.7.0.zip(r-4.6)immunogenViewer_1.7.0.zip(r-4.5)
immunogenViewer_1.7.0.tgz(r-4.6-any)immunogenViewer_1.7.0.tgz(r-4.5-any)
immunogenViewer_1.7.0.tar.gz(r-4.7-any)immunogenViewer_1.7.0.tar.gz(r-4.6-any)
immunogenViewer_1.7.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
immunogenViewer/json (API)

# Install 'immunogenViewer' in R:

install.packages('immunogenViewer', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kathiwaury/immunogenviewer/issues

On BioConductor:immunogenViewer-1.7.0(bioc 3.24)immunogenViewer-1.6.0(bioc 3.23)

featureextraction proteomics software visualization

4.18 score 10 scripts 186 downloads 8 exports 67 dependencies

Last updated from:39b2b138b2. Checks:8 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	166
linux-devel-x86_64	NOTE	246
source / vignettes	OK	214
linux-release-x86_64	NOTE	262
macos-release-arm64	NOTE	231
macos-oldrel-arm64	NOTE	190
windows-devel	NOTE	202
windows-release	NOTE	205
windows-oldrel	NOTE	188
wasm-release	OK	124

Exports:addImmunogen addImmunogenList evaluateImmunogen getProteinFeatures plotImmunogen plotProtein removeImmunogen renameImmunogen

Dependencies:AnnotationDbi askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr dplyr farver fastmap filelock generics ggplot2 glue gtable hms httr httr2 IRanges isoband jsonlite KEGGREST labeling lifecycle magrittr memoise mime openssl patchwork pillar pkgconfig png prettyunits progress purrr R6 rappdirs RColorBrewer rjsoncons rlang RSQLite S4Vectors S7 scales Seqinfo stringi stringr sys tibble tidyr tidyselect UniProt.ws utf8 vctrs viridisLite withr XVector

Using immunogenViewer to evaluate and choose antibodies

Katharina Waury

Rendered fromimmunogenViewer_vignette.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2025-02-08
Started: 2024-05-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Add an immunogen to the Protein DataFrame	addImmunogen
Add multiple immunogens to the Protein DataFrame	addImmunogenList
Create a summary DataFrame of the structural and functional properties of an immunogen	evaluateImmunogen
Retrieve structural and functional features to create a protein DataFrame	getProteinFeatures
Plot protein features of one immunogen region	plotImmunogen
Plot protein features with immunogens highlighted	plotProtein
Remove an existing immunogen	removeImmunogen
Rename an existing immunogen	renameImmunogen