Package: idpr 1.23.0

William M. McFadden

idpr: Profiling and Analyzing Intrinsically Disordered Proteins in R

‘idpr’ aims to integrate tools for the computational analysis of intrinsically disordered proteins (IDPs) within R. This package is used to identify known characteristics of IDPs for a sequence of interest with easily reported and dynamic results. Additionally, this package includes tools for IDP-based sequence analysis to be used in conjunction with other R packages. Described in McFadden WM & Yanowitz JL (2022). "idpr: A package for profiling and analyzing Intrinsically Disordered Proteins in R." PloS one, 17(4), e0266929. <https://doi.org/10.1371/journal.pone.0266929>.

Authors:William M. McFadden [cre, aut], Judith L. Yanowitz [aut, fnd], Michael Buszczak [ctb, fnd]

idpr_1.23.0.tar.gz
idpr_1.23.0.zip(r-4.7)idpr_1.23.0.zip(r-4.6)idpr_1.23.0.zip(r-4.5)
idpr_1.23.0.tgz(r-4.6-any)idpr_1.23.0.tgz(r-4.5-any)
idpr_1.23.0.tar.gz(r-4.7-any)idpr_1.23.0.tar.gz(r-4.6-any)
idpr_1.23.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
idpr/json (API)

# Install 'idpr' in R:
install.packages('idpr', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/wmm27/idpr/issues

Datasets:
  • Disorder40 - Disorder-based Substitution Matrices.
  • Disorder60 - Disorder-based Substitution Matrices.
  • Disorder85 - Disorder-based Substitution Matrices.
  • DUNMat - A Substitution Matrix for Aligning Intrinsically Disordered Proteins
  • EDSSMat50 - EDSSMat Disorder-based Substitution Matrices.
  • EDSSMat60 - EDSSMat Disorder-based Substitution Matrices.
  • EDSSMat62 - EDSSMat Disorder-based Substitution Matrices.
  • EDSSMat70 - EDSSMat Disorder-based Substitution Matrices.
  • EDSSMat75 - EDSSMat Disorder-based Substitution Matrices.
  • EDSSMat80 - EDSSMat Disorder-based Substitution Matrices.
  • EDSSMat90 - EDSSMat Disorder-based Substitution Matrices.
  • GorillaTP53 - Human Cellular tumor antigen p53 and homologs
  • KDNorm - Kyte and Doolittle Scaled Hydropathy Index
  • pKaData - Sets of pKa values for Charged Amino Acids
  • TP53Sequences - Human Cellular tumor antigen p53 and homologs

On BioConductor:idpr-1.23.0(bioc 3.24)idpr-1.22.0(bioc 3.23)

structuralpredictionproteomicscellbiology

6.39 score 5 stars 41 scripts 363 downloads 19 exports 35 dependencies

Last updated from:a9e232c4d2. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE187
linux-devel-x86_64OK228
source / vignettesOK268
linux-release-x86_64OK195
macos-release-arm64OK94
macos-oldrel-arm64OK102
windows-develOK124
windows-releaseOK141
windows-oldrelOK107
wasm-releaseOK127

Exports:chargeCalculationGlobalchargeCalculationLocalchargeHydropathyPlotfoldIndexRhendersonHasselbalchidprofileiuprediupredAnchoriupredRedoxmeanScaledHydropathynetChargescaledHydropathyGlobalscaledHydropathyLocalsequenceChecksequenceMapsequenceMapCoordinatessequencePlotstructuralTendencystructuralTendencyPlot

Dependencies:BiocGenericsBiostringsclicpp11crayondplyrfarvergenericsggplot2gluegtableIRangesisobandjsonlitelabelinglifecyclemagrittrpillarpkgconfigplyrR6RColorBrewerRcpprlangS4VectorsS7scalesSeqinfotibbletidyselectutf8vctrsviridisLitewithrXVector

Charge and Hydropathy Vignette

Rendered fromchargeHydropathy-vignette.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2022-12-10
Started: 2020-06-11

Disordered Matrices Vignette

William McFadden

Rendered fromdisorderedMatrices-vignette.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2024-04-23
Started: 2020-06-11

idpr Package Overview Vignette

William McFadden

Rendered fromidpr-vignette.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2022-12-10
Started: 2020-06-11

IUPred Vignette

William McFadden

Rendered fromiupred-vignette.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2022-12-10
Started: 2020-06-11

Sequence Map Vignette

Rendered fromsequenceMAP-vignette.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2022-12-10
Started: 2020-06-11

Structural Tendency Vignette

William McFadden

Rendered fromstructuralTendency-vignette.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2022-12-10
Started: 2020-06-11