Package: ibh 1.61.0

Kircicegi Korkmaz

ibh: Interaction Based Homogeneity for Evaluating Gene Lists

This package contains methods for calculating Interaction Based Homogeneity to evaluate fitness of gene lists to an interaction network which is useful for evaluation of clustering results and gene list analysis. BioGRID interactions are used in the calculation. The user can also provide their own interactions.

Authors:Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin Atalay.

ibh_1.61.0.tar.gz
ibh_1.61.0.zip(r-4.7)ibh_1.61.0.zip(r-4.6)ibh_1.61.0.zip(r-4.5)
ibh_1.61.0.tgz(r-4.6-any)ibh_1.61.0.tgz(r-4.5-any)
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ibh_1.61.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ibh/json (API)

# Install 'ibh' in R:
install.packages('ibh', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:ibh-1.61.0(bioc 3.24)ibh-1.60.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

qualitycontroldataimportgraphandnetworknetworkenrichment

3.30 score 6 scripts 390 downloads 9 exports 1 dependencies

Last updated from:5bf7aef13f. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR115
linux-devel-x86_64NOTE128
source / vignettesOK201
linux-release-x86_64NOTE132
macos-release-arm64NOTE115
macos-oldrel-arm64NOTE92
windows-develNOTE91
windows-releaseNOTE99
windows-oldrelNOTE89
wasm-releaseOK102

Exports:findEntryibhibhBioGRIDibhClusterEvalibhClusterEvalBioGRIDibhForMultipleGeneListsibhForMultipleGeneListsBioGRIDreadDirectedInteractionsFromCsvreadUndirectedInteractionsFromCsv

Dependencies:simpIntLists

ibh

Rendered fromibh.Rnwusingutils::Sweaveon May 30 2026.

Last update: 2013-11-01
Started: 2013-11-01