Package: ibh 1.55.0

Kircicegi Korkmaz

ibh: Interaction Based Homogeneity for Evaluating Gene Lists

This package contains methods for calculating Interaction Based Homogeneity to evaluate fitness of gene lists to an interaction network which is useful for evaluation of clustering results and gene list analysis. BioGRID interactions are used in the calculation. The user can also provide their own interactions.

Authors:Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin Atalay.

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ibh.pdf |ibh.html✨
ibh/json (API)

# Install 'ibh' in R:
install.packages('ibh', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:ibh-1.55.0(bioc 3.21)ibh-1.54.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

qualitycontroldataimportgraphandnetworknetworkenrichment

3.30 score 1 scripts 246 downloads 9 exports 1 dependencies

Last updated 4 months agofrom:946a7be3f3. Checks:1 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 28 2025
R-4.5-winNOTEJan 28 2025
R-4.5-macNOTEJan 28 2025
R-4.5-linuxNOTEJan 28 2025
R-4.4-winNOTEJan 28 2025
R-4.4-macNOTEJan 28 2025
R-4.3-winNOTEJan 28 2025
R-4.3-macNOTEJan 28 2025

Exports:findEntryibhibhBioGRIDibhClusterEvalibhClusterEvalBioGRIDibhForMultipleGeneListsibhForMultipleGeneListsBioGRIDreadDirectedInteractionsFromCsvreadUndirectedInteractionsFromCsv

Dependencies:simpIntLists

ibh

Rendered fromibh.Rnwusingutils::Sweaveon Jan 28 2025.

Last update: 2013-11-01
Started: 2013-11-01