Package: iSEEfier 1.9.0

Najla Abassi

iSEEfier: Streamlining the creation of initial states for starting an iSEE instance

iSEEfier provides a set of functionality to quickly and intuitively create, inspect, and combine initial configuration objects. These can be conveniently passed in a straightforward manner to the function call to launch iSEE() with the specified configuration. This package currently works seamlessly with the sets of panels provided by the iSEE and iSEEu packages, but can be extended to accommodate the usage of any custom panel (e.g. from iSEEde, iSEEpathways, or any panel developed independently by the user).

Authors:Najla Abassi [aut, cre], Federico Marini [aut]

iSEEfier_1.9.0.tar.gz
iSEEfier_1.9.0.zip(r-4.7)iSEEfier_1.9.0.zip(r-4.6)iSEEfier_1.9.0.zip(r-4.5)
iSEEfier_1.9.0.tgz(r-4.6-any)iSEEfier_1.9.0.tgz(r-4.5-any)
iSEEfier_1.9.0.tar.gz(r-4.7-any)iSEEfier_1.9.0.tar.gz(r-4.6-any)
iSEEfier_1.9.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
iSEEfier/json (API)
NEWS

# Install 'iSEEfier' in R:
install.packages('iSEEfier', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/najlaabassi/iseefier/issues

On BioConductor:iSEEfier-1.9.0(bioc 3.24)iSEEfier-1.8.0(bioc 3.23)

cellbasedassaysclusteringdimensionreductionfeatureextractionguigeneexpressionimmunooncologyshinyappssinglecellsoftwaretranscriptiontranscriptomicsvisualization

4.48 score 2 scripts 234 downloads 6 exports 105 dependencies

Last updated from:5c275bebae. Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE285
linux-devel-x86_64WARNING539
source / vignettesOK395
linux-release-x86_64WARNING538
macos-release-arm64WARNING602
macos-oldrel-arm64WARNING324
windows-develWARNING1908
windows-releaseWARNING1710
windows-oldrelWARNING1926
wasm-releaseOK276

Exports:glue_initialsiSEEinitiSEEmarkeriSEEnrichview_initial_networkview_initial_tiles

Dependencies:abindbase64encBiobaseBiocBaseUtilsBiocGenericsbslibcachemcirclizecliclueclustercodetoolscolorspacecolourpickercommonmarkComplexHeatmapcpp11crayoncrosstalkDelayedArraydigestdoParallelDTevaluatefarverfastmapfontawesomeforeachfsgenericsGenomicRangesGetoptLongggplot2ggrepelGlobalOptionsgluegtablehexbinhighrhtmltoolshtmlwidgetshttpuvigraphIRangesiSEEiSEEhexiSEEuisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelistviewermagrittrMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminiUInlmeotelpkgconfigpngpromisesR6rappdirsRColorBrewerRcpprintrojsrjsonrlangrmarkdownS4ArraysS4VectorsS7sassscalesSeqinfoshapeshinyshinyAceshinydashboardshinyjsshinyWidgetsSingleCellExperimentsourcetoolsSparseArraySummarizedExperimenttinytexvctrsviporviridisLitevisNetworkwithrxfunxtableXVectoryaml

The iSEEfier User's Guide

Najla Abassi, Federico Marini

Rendered fromiSEEfier_userguide.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2025-07-23
Started: 2024-03-12