Package: iCheck 1.35.0
iCheck: QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data
QC pipeline and data analysis tools for high-dimensional Illumina mRNA expression data.
Authors:
iCheck_1.35.0.tar.gz
iCheck_1.35.0.zip(r-4.5)iCheck_1.35.0.zip(r-4.4)iCheck_1.35.0.zip(r-4.3)
iCheck_1.35.0.tgz(r-4.4-any)iCheck_1.35.0.tgz(r-4.3-any)
iCheck_1.35.0.tar.gz(r-4.5-noble)iCheck_1.35.0.tar.gz(r-4.4-noble)
iCheck_1.35.0.tgz(r-4.4-emscripten)iCheck_1.35.0.tgz(r-4.3-emscripten)
iCheck.pdf |iCheck.html✨
iCheck/json (API)
NEWS
# Install 'iCheck' in R: |
install.packages('iCheck', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:iCheck-1.35.0(bioc 3.20)iCheck-1.34.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:ba7c59dad0
Exports:boxPlotsdensityPlotsgenExprSetgenSimData.BayesNormalgetPCAFuncglmWrapperlkhrWrapperlmFitPairedlmFitWrapperLumiBatch2Tablepca2DPlotpca3DPlotplotCurvesplotQCCurvesplotSamplep95p05quantilePlotR2PlotFuncscatterPlotssortExpressionSet
Dependencies:abindaffyaffyioannotateAnnotationDbiaskpassbase64base64encbeanplotBHBiobaseBiocGenericsBiocIOBiocManagerBiocParallelBiostringsbitbit64bitopsblobbslibbumphuntercachemcaToolsclicliprcodetoolscolorspacecpp11crayoncurldata.tableDBIDelayedArrayDelayedMatrixStatsdigestdoRNGdplyrevaluatefansifarverfastmapFDb.InfiniumMethylation.hg19fontawesomeforeachformatRfsfutile.loggerfutile.optionsgenefiltergenericsGeneSelectMMDGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesGEOqueryggplot2gluegplotsgtablegtoolsHDF5ArrayhighrhmshtmltoolshtmlwidgetshttrilluminaioIRangesisobanditeratorsjquerylibjsonliteKEGGRESTKernSmoothknitrlabelinglambda.rlatticelifecyclelimmalmtestlocfitlumimagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemethylumimgcvmimeminfimulttestmunsellnleqslvnlmenor1mixopensslorg.Hs.eg.dbpillarpkgconfigplogrplyrpngpreprocessCoreprettyunitsprogresspurrrquadprogR.methodsS3R.ooR.utilsR6randomForestrappdirsRColorBrewerRcppRCurlreadrreshapereshape2restfulrrglrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrmarkdownrngtoolsRsamtoolsRSQLitertracklayerS4ArraysS4Vectorssassscalesscatterplot3dscrimesiggenessnowSparseArraysparseMatrixStatsstatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttinytexTxDb.Hsapiens.UCSC.hg19.knownGenetzdbUCSC.utilsutf8vctrsviridisLitevroomwithrxfunXMLxml2xtableXVectoryamlzlibbioczoo