Package: iCheck 1.43.0

Weiliang Qiu

iCheck: QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data

QC pipeline and data analysis tools for high-dimensional Illumina mRNA expression data.

Authors:Weiliang Qiu [aut, cre], Brandon Guo [aut, ctb], Christopher Anderson [aut, ctb], Barbara Klanderman [aut, ctb], Vincent Carey [aut, ctb], Benjamin Raby [aut, ctb]

iCheck_1.43.0.tar.gz
iCheck_1.43.0.zip(r-4.7)iCheck_1.43.0.zip(r-4.6)iCheck_1.43.0.zip(r-4.5)
iCheck_1.43.0.tgz(r-4.6-any)iCheck_1.43.0.tgz(r-4.5-any)
iCheck_1.43.0.tar.gz(r-4.7-any)iCheck_1.43.0.tar.gz(r-4.6-any)
iCheck_1.43.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
iCheck/json (API)
NEWS

# Install 'iCheck' in R:
install.packages('iCheck', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:iCheck-1.43.0(bioc 3.24)iCheck-1.42.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneexpressiondifferentialexpressionmicroarraypreprocessingdnamethylationonechanneltwochannelqualitycontrol

4.00 score 2 scripts 344 downloads 5 mentions 19 exports 181 dependencies

Last updated from:50206ef25e. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING339
linux-devel-x86_64NOTE583
source / vignettesOK549
linux-release-x86_64NOTE573
macos-release-arm64NOTE426
macos-oldrel-arm64NOTE398
windows-develNOTE390
windows-releaseNOTE551
windows-oldrelNOTE593
wasm-releaseOK309

Exports:boxPlotsdensityPlotsgenExprSetgenSimData.BayesNormalgetPCAFuncglmWrapperlkhrWrapperlmFitPairedlmFitWrapperLumiBatch2Tablepca2DPlotpca3DPlotplotCurvesplotQCCurvesplotSamplep95p05quantilePlotR2PlotFuncscatterPlotssortExpressionSet

Dependencies:abindaffyaffyioannotateAnnotationDbiaskpassbase64base64encbeanplotBHBiobaseBiocBaseUtilsBiocGenericsBiocIObiocmakeBiocManagerBiocParallelBiostringsbitbit64bitopsblobbslibbumphuntercachemcaToolscigarilloclicliprcodetoolscpp11crayoncurldata.tableDBIDelayedArrayDelayedMatrixStatsdigestdir.expirydoRNGdplyrevaluatefarverfastmapFDb.InfiniumMethylation.hg19filelockfontawesomeforeachformatRfsfutile.loggerfutile.optionsgenefiltergenericsGeneSelectMMDGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesGEOqueryggplot2gluegplotsgtablegtoolsh5mreadHDF5Arrayhighrhmshtmltoolshtmlwidgetshttrhttr2illuminaioIRangesisobanditeratorsjquerylibjsonliteKEGGRESTKernSmoothknitrlabelinglambda.rlatticelifecyclelimmalmtestlocfitlumimagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemethylumimgcvmimeminfimulttestnleqslvnlmenor1mixopensslorg.Hs.eg.dbpillarpkgconfigplyrpngpreprocessCoreprettyunitsprogresspurrrquadprogR.methodsS3R.ooR.utilsR6randomForestrappdirsRColorBrewerRcppRCurlreadrrentrezreshapereshape2restfulrrglrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrmarkdownrngtoolsRsamtoolsRSQLitertracklayerrvestS4ArraysS4VectorsS7sassscalesscatterplot3dscrimeselectrSeqinfosiggenessnowSparseArraysparseMatrixStatsstatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttinytexTxDb.Hsapiens.UCSC.hg19.knownGenetzdbUCSC.utilsutf8vctrsviridisLitevroomwithrxfunXMLxml2xtableXVectoryamlzoo

iCheck

Rendered fromiCheck.Rnwusingutils::Sweaveon Jun 08 2026.

Last update: 2016-10-17
Started: 2015-10-06