Package: hypeR 2.11.0

Andrew Chen

hypeR: An R Package For Geneset Enrichment Workflows

An R Package for Geneset Enrichment Workflows.

Authors:Anthony Federico [aut], Andrew Chen [aut, cre], Stefano Monti [aut]

hypeR_2.11.0.tar.gz
hypeR_2.11.0.zip(r-4.7)hypeR_2.11.0.zip(r-4.6)hypeR_2.11.0.zip(r-4.5)
hypeR_2.11.0.tgz(r-4.6-any)hypeR_2.11.0.tgz(r-4.5-any)
hypeR_2.11.0.tar.gz(r-4.7-any)hypeR_2.11.0.tar.gz(r-4.6-any)
hypeR_2.11.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
hypeR/json (API)
NEWS

# Install 'hypeR' in R:
install.packages('hypeR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/montilab/hyper/issues

On BioConductor:hypeR-2.11.0(bioc 3.24)hypeR-2.10.0(bioc 3.23)

genesetenrichmentannotationpathwaysbioinformaticscomputational-biologygeneset-enrichment-analysis

8.75 score 79 stars 236 scripts 440 downloads 3 mentions 34 exports 90 dependencies

Last updated from:3adb1b5a8b. Checks:2 ERROR, 6 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR191
linux-devel-x86_64WARNING463
source / vignettesOK228
linux-release-x86_64WARNING465
macos-release-arm64ERROR314
macos-oldrel-arm64WARNING265
windows-develWARNING351
windows-releaseWARNING357
windows-oldrelWARNING372
wasm-releaseOK157

Exports:clean_genesetsenrichr_availableenrichr_downloadenrichr_gsetsgenesets_Servergenesets_UIggemptyggeplotggvenngsetshyphyp_dotshyp_emaphyp_hmaphyp_showhyp_to_excelhyp_to_graphhyp_to_rmdhyp_to_tablehypeRhyperdb_availablehyperdb_gsetshyperdb_rgsetsmsigdb_availablemsigdb_downloadmsigdb_gsetsmsigdb_infomsigdb_speciesmsigdb_versionmultihyprctbl_buildrctbl_hyprctbl_mhyprgsets

Dependencies:askpassassertthatbabelgenebase64encBiocManagerBiocStylebookdownbslibcachemclicommonmarkcpp11curldigestdplyrevaluatefarverfastmapfontawesomefsgenericsggforceggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvhttrigraphisobandjquerylibjsonlitekableExtraknitrlabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemimemsigdbropensslopenxlsxotelpillarpkgconfigplyrpolyclippromisespurrrR6rappdirsRColorBrewerRcppreactablereactRreshape2rlangrmarkdownrstudioapiS7sassscalesshinysourcetoolsstringistringrsvglitesyssystemfontstextshapingtibbletidyselecttinytextweenrutf8vctrsviridisLitevisNetworkwithrxfunxml2xtableyamlzip

hypeR

Rendered fromhypeR.Rmdusingknitr::rmarkdownon Jun 09 2026.

Last update: 2025-06-02
Started: 2019-01-29

Readme and manuals

Help Manual

Help pageTopics
Clean labels of genesetsclean_genesets
Get enrichr available genesetsenrichr_available
Download data from enrichr in the form of a named listenrichr_download
Download data from enrichr in the form of a gsets objectenrichr_gsets
Shiny server module for geneset selectiongenesets_Server
Shiny interface module for geneset selectiongenesets_UI
An empty ggplotggempty
Enrichment plot implemented in ggplotggeplot
Venn diagram implemented in ggplotggvenn
A genesets objectgsets
A hyp objecthyp
Visualize hyp/multihyp objects as a dots plothyp_dots
Visualize hyp/multihyp objects as an enrichment maphyp_emap
Visualize hyp/multihyp objects as a hiearchy maphyp_hmap
Convert a hyp object to a reactable tablehyp_show
Export hyp/multihyp object to excelhyp_to_excel
Convert a hyp object to an igraph objecthyp_to_graph
Export hyp object to rmarkdownhyp_to_rmd
Export hyp/multihyp object to tablehyp_to_table
Calculate enrichment of one or more signatureshypeR
Check available data to download from hyperdbhyperdb_available
Download data from hyperdbhyperdb_gsets
Download data from hyperdb in the form of a rgsets objecthyperdb_rgsets
Differential Expressionlimma
Get msigdbr available genesetsmsigdb_available
Download data from msigdb in the form of a named listmsigdb_download
Download data from msigdb in the form of a gsets objectmsigdb_gsets
Print msigdb gsets informationmsigdb_info
Get msigdbr available speciesmsigdb_species
Get msigdbr package version numbermsigdb_version
A multihyp objectmultihyp
Reactable builder for hyp or mhyp objectsrctbl_build
Reactable table for hyp objectsrctbl_hyp
Reactable table for multihyp objectsrctbl_mhyp
A relational genesets objectrgsets
Co-expression Moduleswgcna