Package: hmdbQuery 1.27.0

VJ Carey

hmdbQuery: utilities for exploration of human metabolome database

Define utilities for exploration of human metabolome database, including functions to retrieve specific metabolite entries and data snapshots with pairwise associations (metabolite-gene,-protein,-disease).

Authors:Vince Carey <[email protected]>

hmdbQuery_1.27.0.tar.gz
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hmdbQuery.pdf |hmdbQuery.html✨
hmdbQuery/json (API)

# Install 'hmdbQuery' in R:
install.packages('hmdbQuery', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • hmdb1 - Hmdb1: demonstration HMDB entry
  • hmdb_disease - Hmdb_disease: Sept 2017 extract from hmdb.ca of direct disease associations
  • hmdb_gene - Hmdb_gene: Sept 2017 extract from hmdb.ca of direct gene associations
  • hmdb_omim - Hmdb_omim: Sept 2017 extract from hmdb.ca of direct omim associations
  • hmdb_protein - Hmdb_protein: Sept 2017 extract from hmdb.ca of direct protein associations

On BioConductor:hmdbQuery-1.25.0(bioc 3.20)hmdbQuery-1.24.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

metabolomicsinfrastructure

4.11 score 13 scripts 216 downloads 5 exports 3 dependencies

Last updated 23 days agofrom:cca0a20e80. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winNOTEOct 30 2024
R-4.5-linuxNOTEOct 30 2024
R-4.4-winNOTEOct 30 2024
R-4.4-macNOTEOct 30 2024
R-4.3-winNOTEOct 30 2024
R-4.3-macNOTEOct 30 2024

Exports:biospecimensdiseasesHmdbEntrystoretissues

Dependencies:BiocGenericsS4VectorsXML

hmdbQuery: working with Human Metabolome Database (hmdb.ca)

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered fromhmdbQuery.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2022-01-05
Started: 2017-09-23