Package: gwasurvivr 1.23.0

Abbas Rizvi

gwasurvivr: gwasurvivr: an R package for genome wide survival analysis

gwasurvivr is a package to perform survival analysis using Cox proportional hazard models on imputed genetic data.

Authors:Abbas Rizvi, Ezgi Karaesmen, Martin Morgan, Lara Sucheston-Campbell

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NEWS

# Install 'gwasurvivr' in R:
install.packages('gwasurvivr', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/suchestoncampbelllab/gwasurvivr/issues

On BioConductor:gwasurvivr-1.23.0(bioc 3.20)gwasurvivr-1.22.0(bioc 3.19)

bioconductor-package

5 exports 1.08 score 133 dependencies 1 mentions

Last updated 2 months agofrom:a78fc0dec7

Exports:gdsCoxSurvimpute2CoxSurvmichiganCoxSurvplinkCoxSurvsangerCoxSurv

Dependencies:abindAnnotationDbiaskpassbackportsBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobbootbroomBSgenomecachemclicliprcodetoolscpp11crayoncurldata.tableDBIDelayedArrayDNAcopydplyrfansifastmapforcatsforeachformatRformula.toolsfutile.loggerfutile.optionsgdsfmtgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesglmnetglueGWASExactHWGWASToolshavenhmshttrIRangesiteratorsjomojsonliteKEGGRESTlambda.rlatticelifecyclelme4lmtestlogistfmagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicemimeminqamitmlnlmenloptrnnetnumDerivopenssloperator.toolsordinalpanpillarpkgconfigplogrpngprettyunitsprogresspurrrquantregquantsmoothR6RcppRcppEigenRCurlreadrrestfulrRhtslibrjsonrlangrpartRsamtoolsRSQLitertracklayerS4ArraysS4VectorssandwichshapesnowSNPRelateSparseArraySparseMstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbucminfUCSC.utilsutf8VariantAnnotationvctrsvroomwithrXMLXVectoryamlzlibbioczoo

gwasurvivr Vignette

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Last update: 2018-10-04
Started: 2018-05-17