Package: gwasurvivr 1.25.0

Abbas Rizvi

gwasurvivr: gwasurvivr: an R package for genome wide survival analysis

gwasurvivr is a package to perform survival analysis using Cox proportional hazard models on imputed genetic data.

Authors:Abbas Rizvi, Ezgi Karaesmen, Martin Morgan, Lara Sucheston-Campbell

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NEWS

# Install 'gwasurvivr' in R:
install.packages('gwasurvivr', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/suchestoncampbelllab/gwasurvivr/issues

On BioConductor:gwasurvivr-1.25.0(bioc 3.21)gwasurvivr-1.24.0(bioc 3.20)

genomewideassociationsurvivalregressiongeneticssnpgeneticvariabilitypharmacogenomicsbiomedicalinformatics

6.43 score 12 stars 75 scripts 308 downloads 1 mentions 5 exports 135 dependencies

Last updated 4 months agofrom:dd7257d1ed. Checks:7 OK, 1 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 28 2025
R-4.5-winOKJan 28 2025
R-4.5-macWARNINGJan 28 2025
R-4.5-linuxOKJan 28 2025
R-4.4-winOKJan 28 2025
R-4.4-macOKJan 28 2025
R-4.3-winOKJan 28 2025
R-4.3-macOKJan 28 2025

Exports:gdsCoxSurvimpute2CoxSurvmichiganCoxSurvplinkCoxSurvsangerCoxSurv

Dependencies:abindAnnotationDbiaskpassbackportsBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobbootbroomBSgenomecachemclicliprcodetoolscpp11crayoncurldata.tableDBIDelayedArrayDNAcopydplyrfansifastmapforcatsforeachformatRformula.toolsfutile.loggerfutile.optionsgdsfmtgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesglmnetglueGWASExactHWGWASToolshavenhmshttrIRangesiteratorsjomojsonliteKEGGRESTlambda.rlatticelifecyclelme4lmtestlogistfmagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicemimeminqamitmlnlmenloptrnnetnumDerivopenssloperator.toolsordinalpanpillarpkgconfigplogrpngprettyunitsprogresspurrrquantregquantsmoothR6rbibutilsRcppRcppEigenRCurlRdpackreadrreformulasrestfulrRhtslibrjsonrlangrpartRsamtoolsRSQLitertracklayerS4ArraysS4VectorssandwichshapesnowSNPRelateSparseArraySparseMstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbucminfUCSC.utilsutf8VariantAnnotationvctrsvroomwithrXMLXVectoryamlzoo

gwasurvivr Vignette

Abbas Rizvi, Ezgi Karaesmen, Martin Morgan, Lara Sucheston-Campbell

Rendered fromgwasurvivr_Introduction.Rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2018-10-04
Started: 2018-05-17