Package: gwasurvivr 1.25.0

Abbas Rizvi

gwasurvivr: gwasurvivr: an R package for genome wide survival analysis

gwasurvivr is a package to perform survival analysis using Cox proportional hazard models on imputed genetic data.

Authors:Abbas Rizvi, Ezgi Karaesmen, Martin Morgan, Lara Sucheston-Campbell

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NEWS

# Install 'gwasurvivr' in R:
install.packages('gwasurvivr', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/suchestoncampbelllab/gwasurvivr/issues

On BioConductor:gwasurvivr-1.25.0(bioc 3.21)gwasurvivr-1.24.0(bioc 3.20)

genomewideassociationsurvivalregressiongeneticssnpgeneticvariabilitypharmacogenomicsbiomedicalinformatics

6.43 score 12 stars 75 scripts 328 downloads 1 mentions 5 exports 135 dependencies

Last updated 5 months agofrom:dd7257d1ed. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 29 2025
R-4.5-winOKMar 29 2025
R-4.5-macOKMar 29 2025
R-4.5-linuxOKMar 29 2025
R-4.4-winOKMar 29 2025
R-4.4-macOKMar 29 2025
R-4.4-linuxOKMar 29 2025
R-4.3-winOKFeb 27 2025
R-4.3-macOKMar 29 2025

Exports:gdsCoxSurvimpute2CoxSurvmichiganCoxSurvplinkCoxSurvsangerCoxSurv

Dependencies:abindAnnotationDbiaskpassbackportsBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobbootbroomBSgenomecachemclicliprcodetoolscpp11crayoncurldata.tableDBIDelayedArrayDNAcopydplyrfansifastmapforcatsforeachformatRformula.toolsfutile.loggerfutile.optionsgdsfmtgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesglmnetglueGWASExactHWGWASToolshavenhmshttrIRangesiteratorsjomojsonliteKEGGRESTlambda.rlatticelifecyclelme4lmtestlogistfmagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicemimeminqamitmlnlmenloptrnnetnumDerivopenssloperator.toolsordinalpanpillarpkgconfigplogrpngprettyunitsprogresspurrrquantregquantsmoothR6rbibutilsRcppRcppEigenRCurlRdpackreadrreformulasrestfulrRhtslibrjsonrlangrpartRsamtoolsRSQLitertracklayerS4ArraysS4VectorssandwichshapesnowSNPRelateSparseArraySparseMstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbucminfUCSC.utilsutf8VariantAnnotationvctrsvroomwithrXMLXVectoryamlzoo

gwasurvivr Vignette

Abbas Rizvi, Ezgi Karaesmen, Martin Morgan, Lara Sucheston-Campbell

Rendered fromgwasurvivr_Introduction.Rmdusingknitr::rmarkdownon Mar 29 2025.

Last update: 2018-10-04
Started: 2018-05-17