Package: groHMM 1.39.0
groHMM: GRO-seq Analysis Pipeline
A pipeline for the analysis of GRO-seq data.
Authors:
groHMM_1.39.0.tar.gz
groHMM_1.39.0.zip(r-4.5)groHMM_1.39.0.zip(r-4.4)groHMM_1.39.0.zip(r-4.3)
groHMM_1.39.0.tgz(r-4.4-arm64)groHMM_1.39.0.tgz(r-4.4-x86_64)groHMM_1.39.0.tgz(r-4.3-arm64)groHMM_1.39.0.tgz(r-4.3-x86_64)
groHMM_1.39.0.tar.gz(r-4.5-noble)groHMM_1.39.0.tar.gz(r-4.4-noble)
groHMM_1.39.0.tgz(r-4.4-emscripten)groHMM_1.39.0.tgz(r-4.3-emscripten)
groHMM.pdf |groHMM.html✨
groHMM/json (API)
NEWS
# Install 'groHMM' in R: |
install.packages('groHMM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/kraus-lab/grohmm/issues
On BioConductor:groHMM-1.39.0(bioc 3.20)groHMM-1.38.0(bioc 3.19)
Last updated 2 months agofrom:d83ee483c8
Exports:averagePlotbreakTranscriptsOnGenescombineTranscriptscountMappableReadsInIntervaldetectTranscriptsevaluateHMMInAnnotationsexpressedGenesgetCoresgetTxDensitylimitToXkbmakeConsensusAnnotationsmetaGenemetaGene_nLmetaGeneMatrixpausingIndexpolymeraseWavereadBedRgammaMLERnormRnorm.exprunMetaGenetlsDemingtlsLoesstlsSvdwindowAnalysiswriteWiggle
Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitopscodetoolscpp11crayoncurlDelayedArrayformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangeshttrIRangesjsonlitelambda.rlatticeMASSMatrixMatrixGenericsmatrixStatsmimeopensslR6RCurlrestfulrRhtslibrjsonRsamtoolsrtracklayerS4ArraysS4VectorssnowSparseArraySummarizedExperimentsysUCSC.utilsXMLXVectoryamlzlibbioc