Package: globaltest 5.59.0

Jelle Goeman

globaltest: Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing

The global test tests groups of covariates (or features) for association with a response variable. This package implements the test with diagnostic plots and multiple testing utilities, along with several functions to facilitate the use of this test for gene set testing of GO and KEGG terms.

Authors:Jelle Goeman and Jan Oosting, with contributions by Livio Finos, Aldo Solari, Dominic Edelmann

globaltest_5.59.0.tar.gz
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globaltest.pdf |globaltest.html✨
globaltest/json (API)

Peer review:

On BioConductor:globaltest-5.59.0(bioc 3.20)globaltest-5.58.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

43 exports 2.27 score 44 dependencies 7 dependents 30 mentions

Last updated 2 months agofrom:1bfa681950

Exports:aliasalias<-bbasebtensorcoefficientscombinecomparativecovariatesdrawextractfeaturesfindFocusfitted.valuesfocusLevelgtgt.optionsgtBroadgtConceptgtGOgtKEGGgtKSgtLIgtPShistinheritanceleafNodesmlogitmodel.matrixp.adjustp.valuereparamZresidualsresultreweighZshowsizesortstermssubjectssubsetssummaryweightsz.score

Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapGenomeInfoDbGenomeInfoDbDatagluehttrIRangesjsonliteKEGGRESTlatticelifecycleMatrixmemoisemimeopensslpkgconfigplogrpngR6rlangRSQLiteS4VectorssurvivalsysUCSC.utilsvctrsXMLxtableXVectorzlibbioc