Package: ggtreeSpace 1.3.0
Guangchuang Yu
ggtreeSpace: Visualizing Phylomorphospaces using 'ggtree'
This package is a comprehensive visualization tool specifically designed for exploring phylomorphospace. It not only simplifies the process of generating phylomorphospace, but also enhances it with the capability to add graphic layers to the plot with grammar of graphics to create fully annotated phylomorphospaces. It also provide some utilities to help interpret evolutionary patterns.
Authors:
ggtreeSpace_1.3.0.tar.gz
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ggtreeSpace_1.3.0.tgz(r-4.4-any)ggtreeSpace_1.3.0.tgz(r-4.3-any)
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ggtreeSpace.pdf |ggtreeSpace.html✨
ggtreeSpace/json (API)
NEWS
| # Install 'ggtreeSpace' in R: |
| install.packages('ggtreeSpace', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/yulab-smu/ggtreespace/issues
On BioConductor:ggtreeSpace-1.1.1(bioc 3.20)ggtreeSpace-1.0.0(bioc 3.19)
annotationvisualizationphylogeneticssoftware
Last updated 23 days agofrom:4e39526c16. Checks:OK: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 30 2024 |
| R-4.5-win | WARNING | Oct 30 2024 |
| R-4.5-linux | WARNING | Oct 30 2024 |
| R-4.4-win | WARNING | Oct 30 2024 |
| R-4.4-mac | WARNING | Oct 30 2024 |
| R-4.3-win | WARNING | Oct 30 2024 |
| R-4.3-mac | WARNING | Oct 30 2024 |
Exports:geom_treespacegeom_tsheatmapggplot_addggtreespacemake_ts_dataphylospmtheme_treespacetheme_treespace2
Dependencies:apeaplotcliclusterGenerationcodacodetoolscolorspacecombinatcpp11crayondeldirDEoptimdigestdoParalleldplyrexpmfansifarverfastmatchforcatsforeachfsgenericsGGallyggfunggplot2ggplotifyggstatsggtreegluegridGraphicsgtablehmsigraphinterpisobanditeratorsjsonlitelabelinglatticelazyevallifecyclemagrittrmapsMASSMatrixmgcvmnormtmunsellnlmenumDerivoptimParallelpatchworkphangornphytoolspillarpkgconfigplyrprettyunitsprogresspurrrquadprogR6RColorBrewerRcppRcppEigenrlangscalesscatterplot3dstringistringrtibbletidyrtidyselecttidytreetreeioutf8vctrsviridisLitewithryulab.utils
