Package: ggtreeSpace 1.9.0

Guangchuang Yu

ggtreeSpace: Visualizing Phylomorphospaces using 'ggtree'

This package is a comprehensive visualization tool specifically designed for exploring phylomorphospace. It not only simplifies the process of generating phylomorphospace, but also enhances it with the capability to add graphic layers to the plot with grammar of graphics to create fully annotated phylomorphospaces. It also provide some utilities to help interpret evolutionary patterns.

Authors:Guangchuang Yu [aut, cre, ths, cph], Li Lin [ctb]

ggtreeSpace_1.9.0.tar.gz
ggtreeSpace_1.9.0.zip(r-4.7)ggtreeSpace_1.9.0.zip(r-4.6)ggtreeSpace_1.9.0.zip(r-4.5)
ggtreeSpace_1.9.0.tgz(r-4.6-any)ggtreeSpace_1.9.0.tgz(r-4.5-any)
ggtreeSpace_1.9.0.tar.gz(r-4.7-any)ggtreeSpace_1.9.0.tar.gz(r-4.6-any)
ggtreeSpace_1.9.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ggtreeSpace/json (API)
NEWS

# Install 'ggtreeSpace' in R:
install.packages('ggtreeSpace', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yulab-smu/ggtreespace/issues

On BioConductor:ggtreeSpace-1.9.0(bioc 3.24)ggtreeSpace-1.8.0(bioc 3.23)

annotationvisualizationphylogeneticssoftware

5.32 score 5 stars 14 scripts 234 downloads 8 exports 102 dependencies

Last updated from:c97e28dda2. Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE150
linux-devel-x86_64WARNING249
source / vignettesOK230
linux-release-x86_64WARNING252
macos-release-arm64WARNING130
macos-oldrel-arm64WARNING191
windows-develWARNING138
windows-releaseWARNING149
windows-oldrelWARNING128
wasm-releaseOK142

Exports:geom_treespacegeom_tsheatmapggplot_addggtreespacemake_ts_dataphylospmtheme_treespacetheme_treespace2

Dependencies:apeaplotbase64encbslibcachemcliclusterGenerationcodacodetoolscombinatcpp11crayondeldirDEoptimdigestdoParalleldplyrevaluateexpmfarverfastmapfastmatchfontawesomefontBitstreamVerafontLiberationfontquiverforcatsforeachfsgdtoolsgenericsGGallyggfunggiraphggplot2ggplotifyggstatsggtreegluegridGraphicsgtablehighrhmshtmltoolshtmlwidgetsigraphinterpisobanditeratorsjquerylibjsonliteknitrlabelinglatticelazyevallifecyclemagrittrmapsMASSMatrixmemoisemimemnormtnlmenumDerivoptimParallelpatchworkphangornphytoolspillarpkgconfigprettyunitsprogresspurrrquadprogR6rappdirsRColorBrewerRcppRcppEigenrlangrmarkdownS7sassscalesscatterplot3dstringistringrsystemfontstibbletidyrtidyselecttidytreetinytextreeioutf8vctrsviridisLitewithrxfunyamlyulab.utils

ggtreeSpace-Getting Started

Lin Li, Guangchuang Yu

Rendered fromggtreeSpace.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2024-04-13
Started: 2024-03-21