Package: ggtreeSpace 1.3.0

Guangchuang Yu

ggtreeSpace: Visualizing Phylomorphospaces using 'ggtree'

This package is a comprehensive visualization tool specifically designed for exploring phylomorphospace. It not only simplifies the process of generating phylomorphospace, but also enhances it with the capability to add graphic layers to the plot with grammar of graphics to create fully annotated phylomorphospaces. It also provide some utilities to help interpret evolutionary patterns.

Authors:Guangchuang Yu [aut, cre, ths, cph], Li Lin [ctb]

ggtreeSpace_1.3.0.tar.gz
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ggtreeSpace.pdf |ggtreeSpace.html✨
ggtreeSpace/json (API)
NEWS

# Install 'ggtreeSpace' in R:
install.packages('ggtreeSpace', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yulab-smu/ggtreespace/issues

On BioConductor:ggtreeSpace-1.3.0(bioc 3.21)ggtreeSpace-1.2.0(bioc 3.20)

annotationvisualizationphylogeneticssoftware

5.80 score 5 stars 12 scripts 164 downloads 8 exports 81 dependencies

Last updated 5 months agofrom:4e39526c16. Checks:1 OK, 8 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 29 2025
R-4.5-winWARNINGMar 29 2025
R-4.5-macWARNINGMar 29 2025
R-4.5-linuxWARNINGMar 29 2025
R-4.4-winWARNINGMar 29 2025
R-4.4-macWARNINGMar 29 2025
R-4.4-linuxWARNINGMar 29 2025
R-4.3-winWARNINGMar 29 2025
R-4.3-macWARNINGMar 29 2025

Exports:geom_treespacegeom_tsheatmapggplot_addggtreespacemake_ts_dataphylospmtheme_treespacetheme_treespace2

Dependencies:apeaplotcliclusterGenerationcodacodetoolscolorspacecombinatcpp11crayondeldirDEoptimdigestdoParalleldplyrexpmfansifarverfastmatchforcatsforeachfsgenericsGGallyggfunggplot2ggplotifyggstatsggtreegluegridGraphicsgtablehmsigraphinterpisobanditeratorsjsonlitelabelinglatticelazyevallifecyclemagrittrmapsMASSMatrixmgcvmnormtmunsellnlmenumDerivoptimParallelpatchworkphangornphytoolspillarpkgconfigplyrprettyunitsprogresspurrrquadprogR6RColorBrewerRcppRcppEigenrlangscalesscatterplot3dstringistringrtibbletidyrtidyselecttidytreetreeioutf8vctrsviridisLitewithryulab.utils

ggtreeSpace-Getting Started

Lin Li, Guangchuang Yu

Rendered fromggtreeSpace.Rmdusingknitr::rmarkdownon Mar 29 2025.

Last update: 2024-04-13
Started: 2024-03-21