Package: ggtreeSpace 1.1.0

Guangchuang Yu

ggtreeSpace: Visualizing Phylomorphospaces using 'ggtree'

This package is a comprehensive visualization tool specifically designed for exploring phylomorphospace. It not only simplifies the process of generating phylomorphospace, but also enhances it with the capability to add graphic layers to the plot with grammar of graphics to create fully annotated phylomorphospaces. It also provide some utilities to help interpret evolutionary patterns.

Authors:Guangchuang Yu [aut, cre, ths, cph], Li Lin [ctb]

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ggtreeSpace.pdf |ggtreeSpace.html✨
ggtreeSpace/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/yulab-smu/ggtreespace/issues

On BioConductor:ggtreeSpace-1.1.0(bioc 3.20)ggtreeSpace-1.0.0(bioc 3.19)

bioconductor-package

8 exports 0.82 score 95 dependencies

Last updated 2 months agofrom:c42ecdbeae

Exports:geom_treespacegeom_tsheatmapggplot_addggtreespacemake_ts_dataphylospmtheme_treespacetheme_treespace2

Dependencies:apeaplotbackportsbitbit64broombroom.helperscachemclicliprclusterGenerationcodacodetoolscolorspacecombinatcpp11crayondeldirDEoptimdigestdoParalleldplyrexpmfansifarverfastmapfastmatchforcatsforeachfsgenericsGGallyggfunggplot2ggplotifyggstatsggtreegluegridGraphicsgtablehavenhmsigraphinterpisobanditeratorsjsonlitelabelinglabelledlatticelazyevallifecyclemagrittrmapsMASSMatrixmemoisemgcvmnormtmunsellnlmenumDerivoptimParallelpatchworkphangornphytoolspillarpkgconfigplyrprettyunitsprogresspurrrquadprogR6RColorBrewerRcppRcppEigenreadrrlangscalesscatterplot3dstringistringrtibbletidyrtidyselecttidytreetreeiotzdbutf8vctrsviridisLitevroomwithryulab.utils