Package: ggspavis 1.13.0

Lukas M. Weber

ggspavis: Visualization functions for spatial transcriptomics data

Visualization functions for spatial transcriptomics data. Includes functions to generate several types of plots, including spot plots, feature (molecule) plots, reduced dimension plots, spot-level quality control (QC) plots, and feature-level QC plots, for datasets from the 10x Genomics Visium and other technological platforms. Datasets are assumed to be in either SpatialExperiment or SingleCellExperiment format.

Authors:Lukas M. Weber [aut, cre], Helena L. Crowell [aut], Yixing E. Dong [aut]

ggspavis_1.13.0.tar.gz
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ggspavis.pdf |ggspavis.html✨
ggspavis/json (API)
NEWS

# Install 'ggspavis' in R:

install.packages('ggspavis', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lmweber/ggspavis/issues

On BioConductor:ggspavis-1.13.0(bioc 3.21)ggspavis-1.12.0(bioc 3.20)

spatial singlecell transcriptomics geneexpression qualitycontrol dimensionreduction

6.64 score 2 stars 218 scripts 354 downloads 7 exports 80 dependencies

Last updated 2 months agofrom:479bf59c7e. Checks:OK: 1 NOTE: 5 ERROR: 1. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Dec 19 2024
R-4.5-win	NOTE	Dec 19 2024
R-4.5-linux	NOTE	Dec 19 2024
R-4.4-win	NOTE	Dec 19 2024
R-4.4-mac	NOTE	Dec 19 2024
R-4.3-win	NOTE	Dec 19 2024
R-4.3-mac	ERROR	Dec 19 2024