Package: ggspavis 1.11.0

Lukas M. Weber

ggspavis: Visualization functions for spatial transcriptomics data

Visualization functions for spatial transcriptomics data. Includes functions to generate several types of plots, including spot plots, feature (molecule) plots, reduced dimension plots, spot-level quality control (QC) plots, and feature-level QC plots, for datasets from the 10x Genomics Visium and other technological platforms. Datasets are assumed to be in either SpatialExperiment or SingleCellExperiment format.

Authors:Lukas M. Weber [aut, cre], Helena L. Crowell [aut], Yixing E. Dong [aut]

ggspavis_1.11.0.tar.gz
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ggspavis.pdf |ggspavis.html✨
ggspavis/json (API)
NEWS

# Install 'ggspavis' in R:

install.packages('ggspavis', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lmweber/ggspavis/issues

On BioConductor:ggspavis-1.11.0(bioc 3.20)ggspavis-1.10.0(bioc 3.19)

spatial singlecell transcriptomics geneexpression qualitycontrol dimensionreduction

7 exports 2 stars 6.36 score 80 dependencies 114 scripts 282 downloads

Last updated 5 months agofrom:57a47e6a3f. Checks:OK: 1 NOTE: 5 ERROR: 1. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 22 2024
R-4.5-win	NOTE	Sep 22 2024
R-4.5-linux	NOTE	Sep 22 2024
R-4.4-win	NOTE	Sep 22 2024
R-4.4-mac	NOTE	Sep 22 2024
R-4.3-win	NOTE	Sep 22 2024
R-4.3-mac	ERROR	Sep 22 2024