Package: ggkegg 1.5.0
Noriaki Sato
ggkegg: Analyzing and visualizing KEGG information using the grammar of graphics
This package aims to import, parse, and analyze KEGG data such as KEGG PATHWAY and KEGG MODULE. The package supports visualizing KEGG information using ggplot2 and ggraph through using the grammar of graphics. The package enables the direct visualization of the results from various omics analysis packages.
Authors:
ggkegg_1.5.0.tar.gz
ggkegg_1.5.0.zip(r-4.5)ggkegg_1.5.0.zip(r-4.4)ggkegg_1.5.0.zip(r-4.3)
ggkegg_1.5.0.tgz(r-4.4-any)ggkegg_1.5.0.tgz(r-4.3-any)
ggkegg_1.5.0.tar.gz(r-4.5-noble)ggkegg_1.5.0.tar.gz(r-4.4-noble)
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ggkegg.pdf |ggkegg.html✨
ggkegg/json (API)
NEWS
| # Install 'ggkegg' in R: |
| install.packages('ggkegg', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/noriakis/ggkegg/issues
On BioConductor:ggkegg-1.5.0(bioc 3.21)ggkegg-1.4.0(bioc 3.20)
pathwaysdataimportkeggggplot2ggraphpathwaytidygraphvisualization
Last updated 2 months agofrom:5ce3db0b51. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 27 2024 |
| R-4.5-win | NOTE | Nov 27 2024 |
| R-4.5-linux | NOTE | Nov 27 2024 |
| R-4.4-win | NOTE | Nov 27 2024 |
| R-4.4-mac | NOTE | Nov 27 2024 |
| R-4.3-win | NOTE | Nov 27 2024 |
| R-4.3-mac | NOTE | Nov 27 2024 |
Exports:add_titleappend_cpappend_label_positionassign_deseq2carrowcombine_with_bnlearnconvert_idcreate_test_modulecreate_test_networkcreate_test_pathwayedge_matrixedge_numericedge_numeric_sumgeom_kegggeom_node_rectgeom_node_rect_kegggeom_node_rect_multigeom_node_shadowtextget_module_attributeget_network_attributeggkeggggkeggsaveggplot_add.geom_keggggplot_add.geom_node_rect_keggggplot_add.geom_node_rect_multiggplot_add.overlay_raw_maphighlight_entitieshighlight_modulehighlight_set_edgeshighlight_set_nodesmodulemodule_abundancemodule_completenessmodule_textmulti_pathway_nativenetworknetwork_graphnode_matrixnode_numericobtain_sequential_module_definitionoutput_overlay_imageoverlay_raw_mappathwaypathway_abundancepathway_infoplot_kegg_networkplot_module_blocksplot_module_textprocess_lineprocess_reactionrawMaprawValuereturn_line_compoundsstamp
Dependencies:askpassBiocFileCachebitbit64blobcachemclicolorspacecpp11crayoncurldata.tableDBIdbplyrdplyrfansifarverfastmapfilelockgenericsGetoptLongggforceggplot2ggraphggrepelGlobalOptionsgluegraphlayoutsgridExtragtablehttrigraphisobandjsonlitelabelinglatticelifecyclemagickmagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpatchworkpillarpkgconfigplogrpolyclippurrrR6RColorBrewerRcppRcppArmadilloRcppEigenrjsonrlangRSQLitescalesshadowtextstringistringrsyssystemfontstibbletidygraphtidyrtidyselecttweenrutf8vctrsviridisviridisLitewithrXML
