Package: gg4way 1.5.0

Benjamin I Laufer

gg4way: 4way Plots of Differential Expression

4way plots enable a comparison of the logFC values from two contrasts of differential gene expression. The gg4way package creates 4way plots using the ggplot2 framework and supports popular Bioconductor objects. The package also provides information about the correlation between contrasts and significant genes of interest.

Authors:Benjamin I Laufer [aut, cre], Brad A Friedman [aut]

gg4way_1.5.0.tar.gz
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gg4way.pdf |gg4way.html✨
gg4way/json (API)
NEWS

# Install 'gg4way' in R:
install.packages('gg4way', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ben-laufer/gg4way/issues

Datasets:

On BioConductor:gg4way-1.5.0(bioc 3.21)gg4way-1.4.0(bioc 3.20)

softwarevisualizationdifferentialexpressiongeneexpressiontranscriptionrnaseqsinglecellsequencing

4.40 score 2 scripts 151 downloads 4 exports 81 dependencies

Last updated 4 months agofrom:b67ad3a3fd. Checks:7 OK, 1 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 26 2025
R-4.5-winOKJan 26 2025
R-4.5-macWARNINGJan 26 2025
R-4.5-linuxOKJan 26 2025
R-4.4-winOKJan 26 2025
R-4.4-macOKJan 26 2025
R-4.3-winOKJan 26 2025
R-4.3-macOKJan 26 2025

Exports:getCorgetSharedgetTotalsgg4way

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocParallelclicodetoolscolorspacecpp11crayoncurlDelayedArrayDESeq2dplyredgeRfansifarverformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2ggrepelgluegtablehmshttrIRangesisobandjanitorjsonlitelabelinglambda.rlatticelifecyclelimmalocfitlubridatemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimemunsellnlmeopensslpillarpkgconfigpurrrR6RColorBrewerRcppRcppArmadillorlangS4ArraysS4VectorsscalessnakecasesnowSparseArraystatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttimechangeUCSC.utilsutf8vctrsviridisLitewithrXVector

gg4way

Ben Laufer

Rendered fromgg4way.Rmdusingknitr::rmarkdownon Jan 26 2025.

Last update: 2024-09-18
Started: 2023-08-30

Readme and manuals

Help Manual

Help pageTopics
airwayFit dataairwayFit
Helper Functions for 'gg4way'extractors getCor getShared getTotals
Create a 4way plotgg4way gg4way.default gg4way.DESeqDataSet gg4way.list gg4way.MArrayLM gg4way.SimpleList