Package: gg4way 1.5.0

Benjamin I Laufer

gg4way: 4way Plots of Differential Expression

4way plots enable a comparison of the logFC values from two contrasts of differential gene expression. The gg4way package creates 4way plots using the ggplot2 framework and supports popular Bioconductor objects. The package also provides information about the correlation between contrasts and significant genes of interest.

Authors:Benjamin I Laufer [aut, cre], Brad A Friedman [aut]

gg4way_1.5.0.tar.gz
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gg4way.pdf |gg4way.html✨
gg4way/json (API)
NEWS

# Install 'gg4way' in R:
install.packages('gg4way', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ben-laufer/gg4way/issues

Datasets:

On BioConductor:gg4way-1.5.0(bioc 3.21)gg4way-1.4.0(bioc 3.20)

softwarevisualizationdifferentialexpressiongeneexpressiontranscriptionrnaseqsinglecellsequencing

4.48 score 1 scripts 130 downloads 4 exports 82 dependencies

Last updated 2 months agofrom:b67ad3a3fd. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-winOKNov 29 2024
R-4.5-linuxOKNov 29 2024
R-4.4-winOKNov 29 2024
R-4.4-macOKNov 29 2024
R-4.3-winOKNov 29 2024
R-4.3-macOKNov 29 2024

Exports:getCorgetSharedgetTotalsgg4way

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocParallelclicodetoolscolorspacecpp11crayoncurlDelayedArrayDESeq2dplyredgeRfansifarverformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2ggrepelgluegtablehmshttrIRangesisobandjanitorjsonlitelabelinglambda.rlatticelifecyclelimmalocfitlubridatemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimemunsellnlmeopensslpillarpkgconfigpurrrR6RColorBrewerRcppRcppArmadillorlangS4ArraysS4VectorsscalessnakecasesnowSparseArraystatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttimechangeUCSC.utilsutf8vctrsviridisLitewithrXVectorzlibbioc

gg4way

Ben Laufer

Rendered fromgg4way.Rmdusingknitr::rmarkdownon Nov 29 2024.

Last update: 2024-09-18
Started: 2023-08-30

Readme and manuals

Help Manual

Help pageTopics
airwayFit dataairwayFit
Helper Functions for 'gg4way'extractors getCor getShared getTotals
Create a 4way plotgg4way gg4way.default gg4way.DESeqDataSet gg4way.list gg4way.MArrayLM gg4way.SimpleList