Package: gg4way 1.11.0

Benjamin I Laufer

gg4way: 4way Plots of Differential Expression

4way plots enable a comparison of the logFC values from two contrasts of differential gene expression. The gg4way package creates 4way plots using the ggplot2 framework and supports popular Bioconductor objects. The package also provides information about the correlation between contrasts and significant genes of interest.

Authors:Benjamin I Laufer [aut, cre], Brad A Friedman [aut]

gg4way_1.11.0.tar.gz
gg4way_1.11.0.zip(r-4.7)gg4way_1.11.0.zip(r-4.6)gg4way_1.11.0.zip(r-4.5)
gg4way_1.11.0.tgz(r-4.6-any)gg4way_1.11.0.tgz(r-4.5-any)
gg4way_1.11.0.tar.gz(r-4.7-any)gg4way_1.11.0.tar.gz(r-4.6-any)
gg4way_1.11.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
gg4way/json (API)
NEWS

# Install 'gg4way' in R:

install.packages('gg4way', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ben-laufer/gg4way/issues

Datasets:

airwayFit - AirwayFit data

On BioConductor:gg4way-1.11.0(bioc 3.24)gg4way-1.10.0(bioc 3.23)

software visualization differentialexpression geneexpression transcription rnaseq singlecell sequencing

4.18 score 5 scripts 272 downloads 4 exports 66 dependencies

Last updated from:6d25c07768. Checks:1 NOTE, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	215
linux-devel-x86_64	OK	362
source / vignettes	OK	310
linux-release-x86_64	OK	424
macos-release-arm64	OK	192
macos-oldrel-arm64	OK	247
windows-devel	OK	468
windows-release	OK	495
windows-oldrel	OK	542
wasm-release	OK	182

Exports:getCor getShared getTotals gg4way

Dependencies:abind BH Biobase BiocGenerics BiocParallel cli codetools cpp11 DelayedArray DESeq2 dplyr edgeR farver formatR futile.logger futile.options generics GenomicRanges ggplot2 ggrepel glue gtable hms IRanges isoband janitor labeling lambda.r lattice lifecycle limma locfit lubridate magrittr Matrix MatrixGenerics matrixStats pillar pkgconfig purrr R6 RColorBrewer Rcpp RcppArmadillo rlang S4Arrays S4Vectors S7 scales Seqinfo snakecase snow SparseArray statmod stringi stringr SummarizedExperiment tibble tidyr tidyselect timechange utf8 vctrs viridisLite withr XVector

gg4way

Ben Laufer

Rendered fromgg4way.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2024-09-18
Started: 2023-08-30

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
airwayFit data	airwayFit
Helper Functions for 'gg4way'	extractors getCor getShared getTotals
Create a 4way plot	gg4way gg4way.default gg4way.DESeqDataSet gg4way.list gg4way.MArrayLM gg4way.SimpleList