Package: getDEE2 1.15.0

Mark Ziemann

getDEE2: Programmatic access to the DEE2 RNA expression dataset

Digital Expression Explorer 2 (or DEE2 for short) is a repository of processed RNA-seq data in the form of counts. It was designed so that researchers could undertake re-analysis and meta-analysis of published RNA-seq studies quickly and easily. As of April 2020, over 1 million SRA datasets have been processed. This package provides an R interface to access these expression data. More information about the DEE2 project can be found at the project homepage (http://dee2.io) and main publication (https://doi.org/10.1093/gigascience/giz022).

Authors:Mark Ziemann [aut, cre], Antony Kaspi [aut]

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Bug tracker:https://github.com/markziemann/getdee2/issues

On BioConductor:getDEE2-1.15.0(bioc 3.20)getDEE2-1.14.0(bioc 3.19)

bioconductor-package

16 exports 0.49 score 29 dependencies

Last updated 2 months agofrom:ceeaae7688

Exports:getDEE2getDEE2_bundlegetDEE2Metadatalist_bundlesloadFullMetaloadGeneCountsloadGeneInfoloadQcMxloadSummaryMetaloadTxCountsloadTxInfoquery_bundlesqueryDEE2sesrx_aggTx2Gene

Dependencies:abindaskpassBiobaseBiocGenericscrayoncurlDelayedArrayGenomeInfoDbGenomeInfoDbDataGenomicRangeshtm2txthttrIRangesjsonlitelatticeMatrixMatrixGenericsmatrixStatsmimeopensslR6S4ArraysS4VectorsSparseArraySummarizedExperimentsysUCSC.utilsXVectorzlibbioc