Package: genoCN 1.59.1
Wei Sun
genoCN: genotyping and copy number study tools
Simultaneous identification of copy number states and genotype calls for regions of either copy number variations or copy number aberrations
Authors:
genoCN_1.59.1.tar.gz
genoCN_1.59.1.zip(r-4.4)genoCN_1.59.1.zip(r-4.3)
genoCN_1.59.1.tgz(r-4.4-x86_64)genoCN_1.59.1.tgz(r-4.4-arm64)genoCN_1.59.1.tgz(r-4.3-x86_64)genoCN_1.59.1.tgz(r-4.3-arm64)
genoCN_1.59.1.tar.gz(r-4.4-noble)
genoCN_1.59.1.tgz(r-4.4-emscripten)genoCN_1.59.1.tgz(r-4.3-emscripten)
genoCN.pdf |genoCN.html✨
genoCN/json (API)
NEWS
| # Install 'genoCN' in R: |
| install.packages('genoCN', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- init.Para.CNA - Initial parameters for the HMM
- init.Para.CNV - Initial parameters for the HMM of genoCNV
- snpData - Simulated LRR and BAF data for 17,348 SNPs on chromosome 22.
- snpInfo - Information of 17,348 SNPs on chromosome 22.
On BioConductor:genoCN-1.59.0(bioc 3.21)genoCN-1.58.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 3 days agofrom:cb8be09c0e. Checks:1 OK, 4 WARNING, 3 NOTE. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 27 2025 |
| R-4.4-win-x86_64 | NOTE | Mar 27 2025 |
| R-4.4-mac-x86_64 | NOTE | Mar 27 2025 |
| R-4.4-mac-aarch64 | NOTE | Mar 27 2025 |
| R-4.4-linux-x86_64 | WARNING | Mar 27 2025 |
| R-4.3-win-x86_64 | WARNING | Mar 27 2025 |
| R-4.3-mac-x86_64 | WARNING | Mar 27 2025 |
| R-4.3-mac-aarch64 | WARNING | Mar 27 2025 |
Exports:code.genotypegenoCNAgenoCNVplotCN
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| code bi-allele genotype to numerical value | code.genotype |
| Copy Number Aberration | genoCNA |
| Copy Number Variation | genoCNV |
| Initial parameters for the HMM | init.Para.CNA |
| Initial parameters for the HMM of genoCNV | init.Para.CNV |
| plot LRR, BAF, and the copy number estimates | plotCN |
| Simulated LRR and BAF data for 17,348 SNPs on chromosome 22. | snpData |
| Information of 17,348 SNPs on chromosome 22. | snpInfo |