Package: gcatest 2.5.0

Alejandro Ochoa

gcatest: Genotype Conditional Association TEST

GCAT is an association test for genome wide association studies that controls for population structure under a general class of trait models. This test conditions on the trait, which makes it immune to confounding by unmodeled environmental factors. Population structure is modeled via logistic factors, which are estimated using the `lfa` package.

Authors:Wei Hao [aut], Minsun Song [aut], Alejandro Ochoa [aut, cre], John D. Storey [aut]

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gcatest.pdf |gcatest.html✨
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NEWS

# Install 'gcatest' in R:
install.packages('gcatest', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/storeylab/gcatest/issues

Datasets:

On BioConductor:gcatest-2.5.0(bioc 3.20)gcatest-2.4.0(bioc 3.19)

bioconductor-package

4 exports 1.08 score 7 dependencies 1 dependents

Last updated 2 months agofrom:9e27e38128

Exports:delta_deviance_lfgcatgcat.statgcatest

Dependencies:corpcorlatticelfaMatrixRcppRcppEigenRSpectra

gcat Package

Rendered fromgcatest.Rnwusingknitr::knitron Jun 30 2024.

Last update: 2023-06-20
Started: 2015-10-05