Introduction | Simulating the data | Model fit | Checking the goodness of fit | Finding differentially expressed genes | Obtaining fold change estimates | Class prediction | Designing high-throughput experiments
Package: gaga 2.59.0
David Rossell
gaga: GaGa hierarchical model for high-throughput data analysis
Implements the GaGa model for high-throughput data analysis, including differential expression analysis, supervised gene clustering and classification. Additionally, it performs sequential sample size calculations using the GaGa and LNNGV models (the latter from EBarrays package).
Authors:
gaga_2.59.0.tar.gz
gaga_2.59.0.zip(r-4.7)gaga_2.59.0.zip(r-4.6)gaga_2.59.0.zip(r-4.5)
gaga_2.59.0.tgz(r-4.6-x86_64)gaga_2.59.0.tgz(r-4.6-arm64)gaga_2.59.0.tgz(r-4.5-x86_64)gaga_2.59.0.tgz(r-4.5-arm64)
gaga_2.59.0.tar.gz(r-4.7-arm64)gaga_2.59.0.tar.gz(r-4.7-x86_64)gaga_2.59.0.tar.gz(r-4.6-arm64)gaga_2.59.0.tar.gz(r-4.6-x86_64)
gaga_2.59.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
gaga/json (API)
| # Install 'gaga' in R: |
| install.packages('gaga', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:gaga-2.59.0(bioc 3.24)gaga-2.58.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologyonechannelmassspectrometrymultiplecomparisondifferentialexpressionclassification
Last updated from:bf2188e897. Checks:1 ERROR, 4 NOTE, 2 OK, 7 WARNING. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 138 | ||
| linux-devel-arm64 | NOTE | 144 | ||
| linux-devel-x86_64 | NOTE | 203 | ||
| source / vignettes | OK | 172 | ||
| linux-release-arm64 | NOTE | 146 | ||
| linux-release-x86_64 | NOTE | 184 | ||
| macos-release-arm64 | WARNING | 113 | ||
| macos-release-x86_64 | WARNING | 212 | ||
| macos-oldrel-arm64 | WARNING | 116 | ||
| macos-oldrel-x86_64 | WARNING | 222 | ||
| windows-devel | WARNING | 109 | ||
| windows-release | WARNING | 103 | ||
| windows-oldrel | WARNING | 170 | ||
| wasm-release | OK | 89 |
Exports:adjustfitNNbuildPatternscheckfitclasspreddcgammafindgenesfitGGfitNNfitNNSingleHypforwsimDiffExprgeneclusgetparmcgammaparestplotForwSimposmeansGGpowclasspredpowfindgenesrcgammaseqBoundariesGridsimGGsimLNNsimnewsamplessimNN
Dependencies:BiobaseBiocGenericsclustercodaEBarraysgenericslatticeMatrixmgcvnlme
