Package: gDRcore 1.3.2

Arkadiusz Gladki

gDRcore: Processing functions and interface to process and analyze drug dose-response data

This package contains core functions to process and analyze drug response data. The package provides tools for normalizing, averaging, and calculation of gDR metrics data. All core functions are wrapped into the pipeline function allowing analyzing the data in a straightforward way.

Authors:Bartosz Czech [aut], Arkadiusz Gladki [cre, aut], Marc Hafner [aut], Pawel Piatkowski [aut], Natalia Potocka [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut], Marcin Kamianowski [aut], Allison Vuong [aut]

gDRcore_1.3.2.tar.gz
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gDRcore.pdf |gDRcore.html✨
gDRcore/json (API)
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Peer review:

Bug tracker:https://github.com/gdrplatform/gdrcore/issues

On BioConductor:gDRcore-1.3.2(bioc 3.20)gDRcore-1.2.0(bioc 3.19)

bioconductor-package

35 exports 2.73 score 107 dependencies 1 dependents

Last updated 1 months agofrom:72d118b1cb

Exports:.standardize_concadd_CellLine_annotationadd_Drug_annotationaverage_SEcalculate_Blisscalculate_endpt_GR_valuecalculate_excesscalculate_GR_valuecalculate_HSAcalculate_time_dep_GR_valuecleanup_metadataconvert_mae_to_raw_dataconvert_se_to_raw_datacreate_and_normalize_SEcreate_SEdata_modelfit_SEfit_SE.combinationsget_cellline_annotation_from_dtget_default_nested_identifiersget_drug_annotation_from_dtgrr_matchesidentify_data_typeidentify_keysmap_conc_to_standardized_concmap_dfmap_ids_to_fitsmerge_datanormalize_SEprepare_inputremove_drug_batchreplace_conc_with_standardized_concrunDrugResponseProcessingPipelinesplit_raw_datatest_synthetic_data

Dependencies:abindaskpassbackportsBHBiobaseBiocBaseUtilsBiocGenericsBiocParallelbootbroomBumpyMatrixcarcarDatacheckmateclicodetoolscolorspacecowplotcpp11crayoncurldata.tableDelayedArrayDerivdoBydplyrdrcfansifarverformatRfutile.loggerfutile.optionsgDRutilsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablegtoolshttrIRangesisobandjsonlitejsonvalidatelabelinglambda.rlatticelifecyclelme4magrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmgcvmicrobenchmarkmimeminqamodelrmultcompMultiAssayExperimentmunsellmvtnormnlmenloptrnnetnumDerivopensslpbkrtestpillarpkgconfigplotrixpurrrquantregR6RColorBrewerRcppRcppEigenrlangS4ArraysS4VectorssandwichscalessnowSparseArraySparseMstringistringrSummarizedExperimentsurvivalsysTH.datatibbletidyrtidyselectUCSC.utilsutf8V8vctrsviridisLitewithrXVectorzlibbioczoo