Package: frenchFISH 1.17.0
frenchFISH: Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections
FrenchFISH comprises a nuclear volume correction method coupled with two types of Poisson models: either a Poisson model for improved manual spot counting without the need for control probes; or a homogenous Poisson Point Process model for automated spot counting.
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frenchFISH_1.17.0.tar.gz
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frenchFISH.pdf |frenchFISH.html✨
frenchFISH/json (API)
NEWS
# Install 'frenchFISH' in R: |
install.packages('frenchFISH', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:frenchFISH-1.17.0(bioc 3.20)frenchFISH-1.16.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:5cd80d5fc2
Exports:convertFishalyserCsvToCountMatrixgetAutomaticCountsEstimatesgetManualCountsEstimates
Dependencies:abindbackportsbootbroomcarcarDataclicodacolorspacecowplotcpp11DerivdoBydplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatticelifecyclelme4magrittrMASSMatrixMatrixModelsmcmcMCMCpackmgcvmicrobenchmarkminqamodelrmunsellNHPoissonnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigpurrrquantregR6RColorBrewerRcppRcppEigenrlangscalesSparseMstringistringrsurvivaltibbletidyrtidyselectutf8vctrsviridisLitewithr