Package: fobitools 1.21.0

Pol Castellano-Escuder

fobitools: Tools for Manipulating the FOBI Ontology

A set of tools for interacting with the Food-Biomarker Ontology (FOBI). A collection of basic manipulation tools for biological significance analysis, graphs, and text mining strategies for annotating nutritional data.

Authors:Pol Castellano-Escuder [aut, cre], Alex Sánchez-Pla [aut]

fobitools_1.21.0.tar.gz
fobitools_1.21.0.zip(r-4.7-any)fobitools_1.21.0.zip(r-4.6-any)fobitools_1.21.0.zip(r-4.5-any)
fobitools_1.21.0.tgz(r-4.6-any)fobitools_1.21.0.tgz(r-4.5-any)
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fobitools_1.21.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
fobitools/json (API)

# Install 'fobitools' in R:
install.packages('fobitools', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pcastellanoescuder/fobitools/issues

Datasets:
  • fobi - FOBI Table File - Jul 23, 2021
  • fobi_terms - FOBI's 'ontology_index' object - Jul 23, 2021
  • foods - FOBI Foods Table File - Feb 02, 2021
  • idmap - FOBI Identifier Map File - Jul 18, 2021

On BioConductor:fobitools-1.21.0(bioc 3.24)fobitools-1.20.0(bioc 3.23)

massspectrometrymetabolomicssoftwarevisualizationbiomedicalinformaticsgraphandnetworkannotationcheminformaticspathwaysgenesetenrichmentbiological-intrerpretationbiological-knowledgebiological-significance-analysisenrichment-analysisfood-biomarker-ontologyknowledge-graphnutritionobofoundryontologytext-mining

3.30 score 1 stars 7 scripts 406 downloads 7 exports 112 dependencies

Last updated from:40cda2ba39. Checks:8 WARNING, 1 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING245
linux-develWARNING418
source / vignettesERROR332
linux-releaseWARNING380
macos-releaseWARNING260
macos-oldrelWARNING213
windows-develWARNING310
windows-releaseWARNING300
windows-oldrelWARNING268
wasm-releaseOK188

Exports:%>%annotate_foodsfobi_graphid_convertmseaoraparse_fobi

Dependencies:base64encBHBiocParallelbitbit64blobcachemclasscliclisymbolscodetoolscowplotcpp11crayondata.tableDBIdiagramdigestdplyrdtte1071englishevdfarverfastmapfastmatchfffgseaformatRfutile.loggerfutile.optionsfuturefuture.applygenericsggforceggplot2ggraphggrepelglobalsgluegraphlayoutsgridExtragtablehmsigraphipredisobandjsonliteKernSmoothlabelinglambda.rlatticelavalexiconlifecyclelistenvmagrittrMASSMatrixmemoisemgsubNLPnnetnumDerivontologyIndexparallellypillarpkgconfigpolyclipprettyunitsprodlimprogressprogressrproxypurrrqdapRegexR6RColorBrewerRcppRcppArmadilloRecordLinkagerlangrpartRSQLiteS7scalesshapeslamsnowSQUAREMstringistringrsurvivalsystemfontssyuzhettextcleantextshapetibbletictoctidygraphtidyrtidyselecttweenrtzdbutf8vctrsviridisviridisLitevroomwithrxtablezoo