Package: fmcsR 1.47.0

Thomas Girke

fmcsR: Mismatch Tolerant Maximum Common Substructure Searching

The fmcsR package introduces an efficient maximum common substructure (MCS) algorithms combined with a novel matching strategy that allows for atom and/or bond mismatches in the substructures shared among two small molecules. The resulting flexible MCSs (FMCSs) are often larger than strict MCSs, resulting in the identification of more common features in their source structures, as well as a higher sensitivity in finding compounds with weak structural similarities. The fmcsR package provides several utilities to use the FMCS algorithm for pairwise compound comparisons, structure similarity searching and clustering.

Authors:Yan Wang, Tyler Backman, Kevin Horan, Thomas Girke

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Bug tracker:https://github.com/girke-lab/fmcsr/issues

On BioConductor:fmcsR-1.47.0(bioc 3.20)fmcsR-1.46.0(bioc 3.19)

bioconductor-package

9 exports 2.05 score 69 dependencies 1 dependents 4 mentions

Last updated 2 months agofrom:b740e8a95f

Exports:coercefmcsfmcsBatchmcs1mcs2mcs2sdfsetplotMCSshowstats

Dependencies:base64encBHBiocGenericsbitopsbslibcachemChemmineRclicolorspacecrosstalkDBIdigestDTevaluatefansifarverfastmapfontawesomefsggplot2gluegridExtragtablehighrhtmltoolshtmlwidgetshttpuvisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigpngpromisesR6rappdirsRColorBrewerRcppRCurlrjsonrlangrmarkdownrsvgRUnitsassscalesstringitibbletinytexutf8vctrsviridisLitewithrxfunyaml