Package: flowDensity 1.41.0
Mehrnoush Malek
flowDensity: Sequential Flow Cytometry Data Gating
This package provides tools for automated sequential gating analogous to the manual gating strategy based on the density of the data.
Authors:
flowDensity_1.41.0.tar.gz
flowDensity_1.41.0.zip(r-4.5)flowDensity_1.41.0.zip(r-4.4)flowDensity_1.41.0.zip(r-4.3)
flowDensity_1.41.0.tgz(r-4.4-any)flowDensity_1.41.0.tgz(r-4.3-any)
flowDensity_1.41.0.tar.gz(r-4.5-noble)flowDensity_1.41.0.tar.gz(r-4.4-noble)
flowDensity_1.41.0.tgz(r-4.4-emscripten)flowDensity_1.41.0.tgz(r-4.3-emscripten)
flowDensity.pdf |flowDensity.html✨
flowDensity/json (API)
NEWS
| # Install 'flowDensity' in R: |
| install.packages('flowDensity', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:flowDensity-1.41.0(bioc 3.21)flowDensity-1.40.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
bioinformaticsflowcytometrycellbiologyclusteringcancerflowcytdatadatarepresentationstemcelldensitygating
Last updated 2 months agofrom:77d7444d70. Checks:OK: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 22 2024 |
| R-4.5-win | WARNING | Dec 22 2024 |
| R-4.5-linux | WARNING | Dec 22 2024 |
| R-4.4-win | WARNING | Dec 22 2024 |
| R-4.4-mac | WARNING | Dec 22 2024 |
| R-4.3-win | WARNING | Dec 22 2024 |
| R-4.3-mac | WARNING | Nov 22 2024 |
Exports:.trackSlopedeGateflowDensitygetflowFramegetPeaksnmRemovenotSubFrameplotplotDens
Dependencies:abindbackportsBHBiobaseBiocGenericsbitopsbootbroomcarcarDatacaToolsclicolorspacecowplotcpp11cytolibdeldirDerivdoBydplyrfansifarverflowCoreflowVizFormulagenericsggplot2gluegplotsgtablegtoolshexbinIDPmiscinterpisobandjpegKernSmoothlabelinglatticelatticeExtralifecyclelme4magrittrMASSMatrixMatrixModelsmatrixStatsmgcvmicrobenchmarkminqamodelrmunsellnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigpngpolyclippurrrquantregR6RColorBrewerRcppRcppEigenRhdf5librlangRProtoBufLibS4VectorsscalesSparseMstringistringrsurvivaltibbletidyrtidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Class '"CellPopulation"' | CellPopulation-class getflowFrame,CellPopulation-method plot,flowFrame,CellPopulation-method |
| 1D density gating method | deGate |
| Methods for Function 'flowDensity' in Package 'flowDensity' | flowDensity,CellPopulation,ANY,logical flowDensity,flowFrame,ANY,logical |
| 'CellPopulation' class accessor. | getflowFrame getflowFrame, CellPopulation-method |
| Finding Peaks | getPeaks |
| Preprocessing helper function for flow cytometry data | nmRemove |
| Removing a subset of a FlowFrame object | notSubFrame |
| Plot flow cytometry data with density-based colors | plot, flowFrame, CellPopulation-method plotDens |
