Package: flowCut 1.17.0

Justin Meskas

flowCut: Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis

Common techinical complications such as clogging can result in spurious events and fluorescence intensity shifting, flowCut is designed to detect and remove technical artifacts from your data by removing segments that show statistical differences from other segments.

Authors:Justin Meskas [cre, aut], Sherrie Wang [aut]

flowCut_1.17.0.tar.gz
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flowCut.pdf |flowCut.html✨
flowCut/json (API)
NEWS

# Install 'flowCut' in R:
install.packages('flowCut', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • flowCutData - A list containing two GvHD flow frames from flowCore

On BioConductor:flowCut-1.17.0(bioc 3.21)flowCut-1.16.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

flowcytometrypreprocessingqualitycontrolcellbasedassays

3.92 score 21 scripts 264 downloads 2 mentions 2 exports 91 dependencies

Last updated 4 months agofrom:d6a0c68896. Checks:7 OK, 1 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 26 2025
R-4.5-winOKJan 26 2025
R-4.5-macWARNINGJan 26 2025
R-4.5-linuxOKJan 26 2025
R-4.4-winOKJan 26 2025
R-4.4-macOKJan 26 2025
R-4.3-winOKJan 26 2025
R-4.3-macOKNov 27 2024

Exports:flowCutremoveLowDensSections

Dependencies:abindbackportsBHBiobaseBiocGenericsbitopsbootbroomCairocarcarDatacaToolsclassclicolorspacecowplotcpp11cytolibdeldirDerivdoBydplyre1071fansifarverflowCoreflowDensityflowVizFormulagenericsggplot2gluegplotsgtablegtoolshexbinIDPmiscinterpisobandjpegKernSmoothlabelinglatticelatticeExtralifecyclelme4magrittrMASSMatrixMatrixModelsmatrixStatsmgcvmicrobenchmarkminqamodelrmunsellnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigpngpolyclipproxypurrrquantregR6rbibutilsRColorBrewerRcppRcppEigenRdpackreformulasRhdf5librlangRProtoBufLibS4VectorsscalesSparseMstringistringrsurvivaltibbletidyrtidyselectutf8vctrsviridisLitewithr

flowCut: Precise and Accurate Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis

Justin Meskas, Sherrie Wang

Rendered fromflowCut.Rmdusingknitr::rmarkdownon Jan 26 2025.

Last update: 2022-02-17
Started: 2018-02-02