Package: flowCut 1.17.0

Justin Meskas

flowCut: Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis

Common techinical complications such as clogging can result in spurious events and fluorescence intensity shifting, flowCut is designed to detect and remove technical artifacts from your data by removing segments that show statistical differences from other segments.

Authors:Justin Meskas [cre, aut], Sherrie Wang [aut]

flowCut_1.17.0.tar.gz
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flowCut.pdf |flowCut.html✨
flowCut/json (API)
NEWS

# Install 'flowCut' in R:
install.packages('flowCut', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • flowCutData - A list containing two GvHD flow frames from flowCore

On BioConductor:flowCut-1.15.0(bioc 3.20)flowCut-1.14.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

flowcytometrypreprocessingqualitycontrolcellbasedassays

3.90 score 20 scripts 225 downloads 2 mentions 2 exports 88 dependencies

Last updated 23 days agofrom:d6a0c68896. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winOKOct 30 2024
R-4.5-linuxOKOct 30 2024
R-4.4-winOKOct 30 2024
R-4.4-macOKOct 30 2024
R-4.3-winOKOct 30 2024
R-4.3-macOKOct 30 2024

Exports:flowCutremoveLowDensSections

Dependencies:abindbackportsBHBiobaseBiocGenericsbitopsbootbroomCairocarcarDatacaToolsclassclicolorspacecowplotcpp11cytolibdeldirDerivdoBydplyre1071fansifarverflowCoreflowDensityflowVizFormulagenericsggplot2gluegplotsgtablegtoolshexbinIDPmiscinterpisobandjpegKernSmoothlabelinglatticelatticeExtralifecyclelme4magrittrMASSMatrixMatrixModelsmatrixStatsmgcvmicrobenchmarkminqamodelrmunsellnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigpngpolyclipproxypurrrquantregR6RColorBrewerRcppRcppEigenRhdf5librlangRProtoBufLibS4VectorsscalesSparseMstringistringrsurvivaltibbletidyrtidyselectutf8vctrsviridisLitewithr

flowCut: Precise and Accurate Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis

Justin Meskas, Sherrie Wang

Rendered fromflowCut.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2022-02-17
Started: 2018-02-02