License | Package from GitHub | Running flowCut | Introduction | Data | Simple Example | Using deGate from flowDensity to find the gating threshold | Changing the Parameter MaxValleyHgt | Changing the Parameter MaxPercCut | Parameters UseOnlyWorstChannels and AllowFlaggedRerun | Segment Size | Measures Parameter
Package: flowCut 1.23.0
Justin Meskas
flowCut: Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis
Common techinical complications such as clogging can result in spurious events and fluorescence intensity shifting, flowCut is designed to detect and remove technical artifacts from your data by removing segments that show statistical differences from other segments.
Authors:
flowCut_1.23.0.tar.gz
flowCut_1.23.0.zip(r-4.7)flowCut_1.23.0.zip(r-4.6)flowCut_1.23.0.zip(r-4.5)
flowCut_1.23.0.tgz(r-4.6-any)flowCut_1.23.0.tgz(r-4.5-any)
flowCut_1.23.0.tar.gz(r-4.7-any)flowCut_1.23.0.tar.gz(r-4.6-any)
flowCut_1.23.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
flowCut/json (API)
| # Install 'flowCut' in R: |
| install.packages('flowCut', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- flowCutData - A list containing two GvHD flow frames from flowCore
On BioConductor:flowCut-1.23.0(bioc 3.24)flowCut-1.22.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
flowcytometrypreprocessingqualitycontrolcellbasedassays
Last updated from:505f10900f. Checks:1 WARNING, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 177 | ||
| linux-devel-x86_64 | OK | 240 | ||
| source / vignettes | OK | 232 | ||
| linux-release-x86_64 | OK | 274 | ||
| macos-release-arm64 | OK | 119 | ||
| macos-oldrel-arm64 | OK | 110 | ||
| windows-devel | OK | 174 | ||
| windows-release | OK | 146 | ||
| windows-oldrel | OK | 163 | ||
| wasm-release | OK | 197 |
Exports:flowCutremoveLowDensSections
Dependencies:abindbackportsBHBiobaseBiocGenericsbiocmakebitopsbootbroomCairocarcarDatacaToolsclassclicolorspacecowplotcpp11cytolibdeldirDerivdir.expirydoBydplyre1071farverfilelockflowCoreflowDensityflowVizforecastFormulafracdiffgenericsggplot2gluegplotsgtablegtoolshexbinIDPmiscinterpisobandjpegKernSmoothlabelinglatticelatticeExtralifecyclelme4lmtestmagrittrMASSMatrixMatrixModelsmatrixStatsmgcvminqamodelrnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigpngpolyclipproxypurrrquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasRhdf5librlangRProtoBufLibS4VectorsS7scalesSparseMstringistringrsurvivaltibbletidyrtidyselecttimeDateurcautf8vctrsviridisLitewithrzoo
