Package: flowCHIC 1.41.0

Author: Joachim Schumann

flowCHIC: Analyze flow cytometric data using histogram information

A package to analyze flow cytometric data of complex microbial communities based on histogram images

Authors:Joachim Schumann <[email protected]>, Christin Koch <[email protected]>, Ingo Fetzer <[email protected]>, Susann Müller <[email protected]>

# Install 'flowCHIC' in R:

install.packages('flowCHIC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

Results_overlaps - Dataset with labels and sums of informative pixels within the overlap area of the FCS files included to the package
Results_overlaps_incol - Dataset with labels and sums of informative pixels within the overlap area of the second downloadable dataset
Results_overlaps_mix - Dataset with labels and sums of informative pixels within the overlap area of the first downloadable dataset
Results_xor - Dataset with labels and intensity values of the FCS files included to the package
Results_xor_incol - Dataset with labels and intensity values of the second downloadable dataset
Results_xor_mix - Dataset with labels and intensity values of the first downloadable dataset
abiotic_incol - Dataset with abiotic data

On BioConductor:flowCHIC-1.41.0(bioc 3.21)flowCHIC-1.40.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

Last updated 2 months agofrom:837b51da87. Checks:OK: 1 NOTE: 6. Indexed: yes.

Last update: 2014-12-02
Started: 2014-10-08

Help page	Topics
Analyze flow cytometric data using histogram information	flowCHIC
Dataset with abiotic data	abiotic_incol
Calculate overlap and XOR images	calculate_overlaps_xor calculate_overlaps_xor,character-method
FCS files to images	fcs_to_img fcs_to_img,character-method
Create image subsets	img_sub img_sub,character-method
NMDS plot of samples	plot_nmds plot_nmds,data.frame,data.frame-method
Dataset with labels and sums of informative pixels within the overlap area of the FCS files included to the package	Results_overlaps
Dataset with labels and sums of informative pixels within the overlap area of the second downloadable dataset	Results_overlaps_incol
Dataset with labels and sums of informative pixels within the overlap area of the first downloadable dataset	Results_overlaps_mix
Dataset with labels and intensity values of the FCS files included to the package	Results_xor
Dataset with labels and intensity values of the second downloadable dataset	Results_xor_incol
Dataset with labels and intensity values of the first downloadable dataset	Results_xor_mix