Package: flowCHIC 1.47.0

Author: Joachim Schumann

flowCHIC: Analyze flow cytometric data using histogram information

A package to analyze flow cytometric data of complex microbial communities based on histogram images

Authors:Joachim Schumann <[email protected]>, Christin Koch <[email protected]>, Ingo Fetzer <[email protected]>, Susann Müller <[email protected]>

# Install 'flowCHIC' in R:

install.packages('flowCHIC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

abiotic_incol - Dataset with abiotic data
Results_overlaps - Dataset with labels and sums of informative pixels within the overlap area of the FCS files included to the package
Results_overlaps_incol - Dataset with labels and sums of informative pixels within the overlap area of the second downloadable dataset
Results_overlaps_mix - Dataset with labels and sums of informative pixels within the overlap area of the first downloadable dataset
Results_xor - Dataset with labels and intensity values of the FCS files included to the package
Results_xor_incol - Dataset with labels and intensity values of the second downloadable dataset
Results_xor_mix - Dataset with labels and intensity values of the first downloadable dataset

On BioConductor:flowCHIC-1.47.0(bioc 3.24)flowCHIC-1.46.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

Last updated from:9959c7c5fd. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	166
linux-devel-x86_64	NOTE	295
source / vignettes	OK	253
linux-release-x86_64	NOTE	274
macos-release-arm64	NOTE	162
macos-oldrel-arm64	NOTE	129
windows-devel	NOTE	182
windows-release	NOTE	188
windows-oldrel	NOTE	218
wasm-release	OK	188

Last update: 2014-12-02
Started: 2014-10-08

Help page	Topics
Analyze flow cytometric data using histogram information	flowCHIC
Dataset with abiotic data	abiotic_incol
Calculate overlap and XOR images	calculate_overlaps_xor calculate_overlaps_xor,character-method
FCS files to images	fcs_to_img fcs_to_img,character-method
Create image subsets	img_sub img_sub,character-method
NMDS plot of samples	plot_nmds plot_nmds,data.frame,data.frame-method
Dataset with labels and sums of informative pixels within the overlap area of the FCS files included to the package	Results_overlaps
Dataset with labels and sums of informative pixels within the overlap area of the second downloadable dataset	Results_overlaps_incol
Dataset with labels and sums of informative pixels within the overlap area of the first downloadable dataset	Results_overlaps_mix
Dataset with labels and intensity values of the FCS files included to the package	Results_xor
Dataset with labels and intensity values of the second downloadable dataset	Results_xor_incol
Dataset with labels and intensity values of the first downloadable dataset	Results_xor_mix