Package: flowBeads 1.45.0
Nikolas Pontikos
flowBeads: flowBeads: Analysis of flow bead data
This package extends flowCore to provide functionality specific to bead data. One of the goals of this package is to automate analysis of bead data for the purpose of normalisation.
Authors:
flowBeads_1.45.0.tar.gz
flowBeads_1.45.0.zip(r-4.5)flowBeads_1.45.0.zip(r-4.4)flowBeads_1.45.0.zip(r-4.3)
flowBeads_1.45.0.tgz(r-4.4-any)flowBeads_1.45.0.tgz(r-4.3-any)
flowBeads_1.45.0.tar.gz(r-4.5-noble)flowBeads_1.45.0.tar.gz(r-4.4-noble)
flowBeads_1.45.0.tgz(r-4.4-emscripten)flowBeads_1.45.0.tgz(r-4.3-emscripten)
flowBeads.pdf |flowBeads.html✨
flowBeads/json (API)
NEWS
| # Install 'flowBeads' in R: |
| install.packages('flowBeads', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- beads1 - Dako beads on day 1
- beads2 - Dako beads on day 2
- cytocalmef - Cytocal config file
- dakomef - Dako config file
On BioConductor:flowBeads-1.45.0(bioc 3.21)flowBeads-1.44.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologyinfrastructureflowcytometrycellbasedassays
Last updated 2 months agofrom:e4e2a74dc0. Checks:OK: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 18 2024 |
| R-4.5-win | WARNING | Dec 18 2024 |
| R-4.5-linux | WARNING | Dec 18 2024 |
| R-4.4-win | WARNING | Dec 18 2024 |
| R-4.4-mac | WARNING | Dec 18 2024 |
| R-4.3-win | WARNING | Dec 18 2024 |
| R-4.3-mac | WARNING | Nov 18 2024 |
Exports:absoluteNormaliseBeadFlowFramegateBeadsgenerateReportgetClusteringStatsgetDategetMEFparamsgetMEFtransformgetParamsgetTransformFunctionhasMEFmefTransformplotrelativeNormalisetoMEF
Dependencies:BHBiobaseBiocGenericscpp11cytolibDEoptimRevaluateflowCoregenericshighrknitrlatticematrixStatsmvtnormpcaPPRcppRhdf5librobustbaseRProtoBufLibrrcovS4Vectorsxfunxtableyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| flowBeads | flowBeads-package flowBeads |
| absoluteNormalise | absoluteNormalise absoluteNormalise,GatedBeadFlowFrame,data.frame-method |
| BeadFlowFrame | BeadFlowFrame BeadFlowFrame-class dBeadFlowFrame |
| Dako beads on day 1 | beads1 |
| Dako beads on day 2 | beads2 |
| Cytocal config file | cytocalmef |
| Dako config file | dakomef |
| gateBeads | gateBeads gateBeads,BeadFlowFrame-method |
| GatedBeadFlowFrame | GatedBeadFlowFrame GatedBeadFlowFrame-class |
| generateReport | generateReport generateReport,GatedBeadFlowFrame,character-method |
| getClusteringStats | getClusteringStats getClusteringStats,GatedBeadFlowFrame-method |
| getDate | getDate getDate,flowFrame-method |
| getMEFparams | getMEFparams getMEFparams,BeadFlowFrame-method |
| getMEFtransform | getMEFtransform getMEFtransform,GatedBeadFlowFrame-method |
| getParams | getParams getParams,flowFrame-method |
| getTransformFunction | getTransformFunction getTransformFunction,BeadFlowFrame-method |
| hasMEF | hasMEF hasMEF,BeadFlowFrame,character-method |
| length | length length,flowFrame-method |
| Logicle transformation constructor | mefTransform |
| Plot the results of the clustering. Plot only the requested channel which should have a corresponding entry in the MEF files | plot plot,BeadFlowFrame,character-method plot,BeadFlowFrame,missing-method plot,GatedBeadFlowFrame,character-method |
| relativeNormalise | relativeNormalise relativeNormalise,GatedBeadFlowFrame,GatedBeadFlowFrame-method |
| BeadFlowFrame | show |
| toMEF | toMEF toMEF,GatedBeadFlowFrame,flowFrame-method |
