Package: flowBeads 1.43.0

Nikolas Pontikos

flowBeads: flowBeads: Analysis of flow bead data

This package extends flowCore to provide functionality specific to bead data. One of the goals of this package is to automate analysis of bead data for the purpose of normalisation.

Authors:Nikolas Pontikos

flowBeads_1.43.0.tar.gz
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flowBeads.pdf |flowBeads.html✨
flowBeads/json (API)
NEWS

# Install 'flowBeads' in R:
install.packages('flowBeads', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On BioConductor:flowBeads-1.43.0(bioc 3.20)flowBeads-1.42.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

15 exports 1.00 score 23 dependencies

Last updated 2 months agofrom:032bc33ba9

Exports:absoluteNormaliseBeadFlowFramegateBeadsgenerateReportgetClusteringStatsgetDategetMEFparamsgetMEFtransformgetParamsgetTransformFunctionhasMEFmefTransformplotrelativeNormalisetoMEF

Dependencies:BHBiobaseBiocGenericscpp11cytolibDEoptimRevaluateflowCorehighrknitrlatticematrixStatsmvtnormpcaPPRcppRhdf5librobustbaseRProtoBufLibrrcovS4Vectorsxfunxtableyaml

Analysis of Flow Cytometry Bead Data

Rendered fromHowTo-flowBeads.Rnwusingutils::Sweaveon Jul 03 2024.

Last update: 2013-06-13
Started: 2013-06-13

Readme and manuals

Help Manual

Help pageTopics
flowBeadsflowBeads-package flowBeads
absoluteNormaliseabsoluteNormalise absoluteNormalise,GatedBeadFlowFrame,data.frame-method
BeadFlowFrameBeadFlowFrame BeadFlowFrame-class dBeadFlowFrame
Dako beads on day 1beads1
Dako beads on day 2beads2
Cytocal config filecytocalmef
Dako config filedakomef
gateBeadsgateBeads gateBeads,BeadFlowFrame-method
GatedBeadFlowFrameGatedBeadFlowFrame GatedBeadFlowFrame-class
generateReportgenerateReport generateReport,GatedBeadFlowFrame,character-method
getClusteringStatsgetClusteringStats getClusteringStats,GatedBeadFlowFrame-method
getDategetDate getDate,flowFrame-method
getMEFparamsgetMEFparams getMEFparams,BeadFlowFrame-method
getMEFtransformgetMEFtransform getMEFtransform,GatedBeadFlowFrame-method
getParamsgetParams getParams,flowFrame-method
getTransformFunctiongetTransformFunction getTransformFunction,BeadFlowFrame-method
hasMEFhasMEF hasMEF,BeadFlowFrame,character-method
lengthlength length,flowFrame-method
Logicle transformation constructormefTransform
Plot the results of the clustering. Plot only the requested channel which should have a corresponding entry in the MEF filesplot plot,BeadFlowFrame,character-method plot,BeadFlowFrame,missing-method plot,GatedBeadFlowFrame,character-method
relativeNormaliserelativeNormalise relativeNormalise,GatedBeadFlowFrame,GatedBeadFlowFrame-method
BeadFlowFrameshow
toMEFtoMEF toMEF,GatedBeadFlowFrame,flowFrame-method